TABLE 1.
Primers used in this study
Primer | Nucleotide sequence (5′→3′) |
---|---|
Cloning | |
1-4004-F | GCGCAGCGGCGGCCGCGCTGATACCGCCGCCTTGACATTGATTATTGACTAGTT |
1-4004-R | TCAGGAGCTACATTAGGACCATCATCCTCAAGCTCAGAG |
4005-7993-F | TGAGGATGATGGTCCTAATGTAGCTCCTGAAACAAATGT |
4005-7993-R | ACACACTAACAAAAGCACTATGTAAGCTTGCACCAAAAT |
7994-12384-F | CAAGCTTACATAGTGCTTTTGTTAGTGTGTTGTCGAATA |
7994-12384-R | GGTTACCTCCTTAACGTGTACCACCTTGCCATCATTGTC |
12385-16986-F | GGCAAGGTGGTACACGTTAAGGAGGTAACCGCACAGAAT |
12385-16986-R | ACTCAACACGAGCGCGCTGTGGTATGATGCGTGAACATT |
16987-21901-F | GCATCATACCACAGCGCGCTCGTGTTGAGTGTTATGATG |
16987-21901-R | ATAAGAAATACCATCCTCACCAGCACTAGTAACATTAAG |
21902-26980-F | ACTAGTGCTGGTGAGGATGGTATTTCTTATCAACCCTGT |
21902-26980-R | ACTGACAGAAGCCATAAAGTTTCTGTTTAGACTAAATGA |
26981-28980-F | CTAAACAGAAACTTTATGGCTTCTGTCAGTTTTCAGGAT |
26981-28980-R | GCTCACTGACTTTAATTAACTGCGGCGAGGGGCGCGCCACCGCATCCCCAGCAT |
Mutagenesis | |
D350A-F | AAATGGTTTTGCTTTGCCAAGAATCCTACTAATTC |
D350A-R | GAATTAGTAGGATTCTTGGCAAAGCAAAACCATTT |
G332A-F | GCCATATATGATATTGCCAATCCTAAGGGCATTAG |
G332A-R | CTAATGCCCTTAGGATTGGCAATATCATATATGGC |
P334A-K335A-F | GATATTGGCAATGCTGCGGGCATTAGATGTGCC |
P334A-K335A-R | GGCACATCTAATGCCCGCAGCATTGCCAGCATC |
D330A-F | GAAAGCCATATATGCTATTGGCAATCCTAAGGGC |
D330A-R | GCCCTTAGGATTGCCAATAGCATATATGGCTTTC |
RT-qPCR | |
IFN-λ1F | GGTGCTGGCGACTGTGATG |
IFN-λ1R | GATTGGAACTGGCCCATGTG |
IFN-λ3F | ACTTGGCCCAGTTCAAGTCT |
IFN-λ3R | CATCCTTGGCCCTCTTGA |
IFN-λ4F | GCTATGGGACTGTGGGTCTT |
IFN-λ4R | AGGGAGCGGTAGTGAGAGAG |
IFN-αF | ACCTTTGCTTTACTGGTGGCC |
IFN-αR | ATCTGTGCCAGGAGCATCAAG |
IFN-βF | TAGGCGACACTGTTCGTGTTG |
IFN-βR | CCAAGCAAGTTGTAGCTCATGG |
GAPDH-F | CAATGACCCCTTCATTGACC |
GAPDH-R | GACAAGCTTCCCGTTCTCAG |
Subgenome-F | AATCCAGGGCCACTTCGAA |
Subgenome-R | TTCGCCCTTGGGAATTCTC |
Genome-F | TGAAGCCGTCTCATACTATTCTG |
Genome-R | AATCCCTCAACAGTGTCAGC |