TABLE 1.
Response of T/F Env clones to the inhibition by SERINC5, IFITM3, CD4 MAb (RPA-T4), sCD4, and CCR5 antagonist TAK-779
T/F Enva | Subtype | Fold inhibition by SERINC5b | Fold inhibition by IFITM3c | IC50 values for:d,e |
||
---|---|---|---|---|---|---|
CD4 MAb (μg/ml) | sCD4 (nM) | TAK-779 (μM) | ||||
p1012.TC21.32571 | B | 0.48 ± 0.01 | 8.09 ± 0.23 | 0.09 | 331 | 0.15 |
p1006_11.C3.1601 | B | 0.80 ± 0.20 | 7.01 ± 0.80 | 0.05 | 241 | 0.06 |
p1054.TC4.1499 | B | 1.8 ± 0.53 | 3.21 ± 0.02 | 0.11 | 113 | 0.05 |
p1056.TA11.1826 | B | 0.6 ± 0.42 | 3.78 ± 0.70 | 0.06 | 635 | 0.4 |
p1058_11.B11.1550* | B | 10.14 ± 1.30 | 9.22 ± 1.30 | 0.13 | 298 | 0.02 |
p1059_09.A4.1460 | B | 3.7 ± 0.09 | 4.05 ± 0.022 | 0.13 | 201 | 0.09 |
p6244_13.B5.4576 | B | 6.0 ± 0.06 | 5.4 ± 1.04 | 0.05 | 254 | 0.09 |
p6240_08.TA5.4622 | B | 0.56 ± 0.01 | 2.2 ± 0.04 | 0.06 | 478 | 0.14 |
p63358.p3.4013 | B | 1.25 ± 0.002 | 2.6 ± 0.04 | 0.05 | 538 | 0.03 |
p700010040.C9.4520 | B | 8.34 ± 0.027 | 1.53 ± 0.01 | 0.17 | 97 | 0.03 |
p700010058.A4.4375 | B | 0.85 ± 0.02 | 3.20 ± 0.37 | 0.06 | 413 | 0.3 |
p9014_01.TB1.4769 | B | 0.99 ± 0.32 | 4.06 ± 0.35 | 0.06 | >1,000 | 0.54 |
p9021_14.B2.4571 | B | 0.48 ± 0.20 | 1.82 ± 0.28 | 0.05 | 378 | 0.04 |
pPRB926_04.A9.4237 | B | 6.56 ± 0.77 | 1.13 ± 0.04 | 0.18 | 93 | 0.03 |
pPRB931_06.TC3.4930 | B | 0.67 ± 0.15 | 1.65 ± 0.16 | 0.12 | >1,000 | 0.16 |
pPRB958_06.TB1.4305 | B | 0.81 ± 0.31 | 3.57 ± 0.02 | 0.1 | 141 | 0.12 |
pSC05.8C11.2344 | B | 1.35 ± 0.33 | 1.14 ± 0.16 | ND | ND | ND |
pSC45.4B5.2631 | B | 0.99 ± 0.10 | 2.96 ± 0.37 | 0.09 | 268 | 0.28 |
pWEAUd15.410.5017* | B | 1.8 ± 0.06 | 2.40 ± 0.26 | ND | ND | ND |
All the Env clones are R5 tropic except the two clones marked by *, which are dual tropic.
Fold inhibition by SERINC5 was determined by calculating the ratio of infectivity of the SERINC5-free virus to that of the SERINC5-bearing virus.
Fold inhibition by IFITM3 was determined by calculating the ratio of infectivity of the IFITM3-free virus to that of the IFITM3-bearing virus.
The IC50 values were obtained from the study by Keele et al. (30).
ND, not determined.