Table 3.
QTL identified in the three mapping progeny detailing the mapping population in which they were identified, the linkage group, the marker(s) most significantly associated with the variance observed, the LOD, the percentage variance explained and the genetic and physical positions of the peak LOD of each QTL on the ‘Camarosa’ genome sequence where an association was found
| Trait | Mapping population | Linkage group | Most significant marker(s) | LOD | Observed variance explained (%) | Genetic distance (cM) | ‘Camarosa’ chrom | Physical postion (Mbp) |
|---|---|---|---|---|---|---|---|---|
| Ellagic acid deoxyhexoside | ‘Saga’ × ‘Senga Sengana’ | LG1X2 | AX-123357156 | 19.01 | 86.3 | 34.1 | Fvb1-3 | 7.16 |
| Cinnamoyl glucoside | ‘Carisma’ × ‘Senga Sengana' | LG3b | AX-123361118 | 4.01 | 32.5 | 16.7 | Fvb3-2 | 3.82 |
| ‘Saga’ × ‘Senga Sengana’ | LG3b | AX-89787536 | 4.36 | 36.6 | 21 | Fvb3-2 | 7.59 | |
| ‘Marlate’ × ‘Senga Sengana' | LG6A | AX-123615126, AX-166524901 | 6.63 | 51.7 | 17.1 | Fvb6-1 | 17.29 | |
| ‘Saga’ × ‘Senga Sengana’ | LG6A | AX-166524984 | 5.1 | 41.2 | 22.6 | Fvb6-1 | 15.58 | |
| Pelargonidin-3-O-malonylglucoside | ‘Carisma’ × ‘Senga Sengana' | LG6b | AX-166519413, AX-166507849, AX-166515515, AX-166516086 | 11.51 | 67.6 | 7.1 | Fvb6-2 | 30.1–31.7 |
| ‘Saga’ × ‘Senga Sengana’ | LG6b | AX-123362709, AX-166507798 | 9.19 | 61.8 | 32 | Fvb6-2 | 31.23–31.27 | |
| Pelargonidin-3-O-acetylglucoside | ‘Carisma’ × ‘Senga Sengana' | LG6b | AX-166519413, AX-166507849, AX-166515515, AX-166516086 | 5.21 | 40.4 | 7.1 | Fvb6-2 | 30.1–31.7 |
| ‘Saga’ × ‘Senga Sengana’ | LG6b | AX-166505280 | 7.63 | 60.8 | 26.812 | Fvb6-2 | N/Aa |
aNo significant BLAST hit on chromosome Fvb6-2