Table 1.

Sequence similarities (%) for two and five concatenated housekeeping genes and 16S rRNA genes of Bradyrhizobium symbiodeficiens sp. nov., 85S1MB^T versus reference taxa

NA, Sequence not available in public databases.

Sequence similarity (%) to Bradyrhizobium symbiodeficiens 85S1MBT (% coverage if not 100*)
Strain	Five genes† (2679 bp)	Two genes† (854 bp)	16S rRNA gene (1422 bp)	Strain	Five genes† (2679 bp)	Two genes† (854 bp)	16S rRNA gene (1422 bp)
Bradyrhizobium symbiodeficiens  65 S1MB	99.2	99.0	100.0	Bradyrhizobium japonicum USDA6T	94.2	94.4	99.8
Bradyrhizobium symbiodeficiens 101S1MB	99.3	98.7	100.0	Bradyrhizobium jicamae PAC68T	89.7	89.8	97.9
B radyrhizobium symbiodeficiens 141S2	99.4	98.1	100.0	Bradyrhizobium kavangense 14-3T	93.2	92.6	94.9 (95)
Bradyrhizobium algeriense RST89T	89.2	89.8	98.1‡(92)	Bradyrhizobium lablabi CCBAU23086T	89.9	90.4	97.6 (96)
Bradyrhizobium americanum CMVU44T	na	93.4	99.4	Bradyrhizobium liaoningense LMG18230T	94.4	94.3	99.7
Bradyrhizobium amphicarpaeae 39S1MBT	97.0	96.8	99.6	Bradyrhizobium lupini USDA3051T	na	93.1	99.7
Bradyrhizobium arachidis LMG26795T	94.4	94.4	99.0	Bradyrhizobium macuxiense BR10303T	90.4	89.7	97.4‡(91)
Bradyrhizobium betae LMG21987T	94.6	95.1	99.2	Bradyrhizobium manausense HAMBI 3596T	93.0	92.3	98.9
Bradyrhizobium brasilense UFLA03-321T	90.9	89.7	97.5†	Bradyrhizobium mercantei SEMIA 6399T	90.4	89.8	97.8
Bradyrhizobium cajani AMBPC1010T	na	94.0	99.2	Bradyrhizobium namibiense 5-10T	88.8	88.6	97.8
Bradyrhizobium canariense BTA-1T	93.1	93.8	99.6	Bradyrhizobium neotropicale HAMBI 3599T	93.1	92.6	97.4
Bradyrhizobium centrolobii BR10245T	93.0	92.6	96.6‡(93)	Bradyrhizobium nitroreducens TSA1T	94.6	93.0	99.6‡
Bradyrhizobium centrosemae A9T	na	92.3	99.4	Bradyrhizobium oligotrophicum LMG10732T	89.4	87.9	98.6
Bradyrhizobium cytisi CTAW11T	93.3	92.4	99.2	Bradyrhizobium ottawaense OO99T	95.2	94.6	99.9
Bradyrhizobium daqingense CCBAU15774T	93.4	93.2	99.4	Bradyrhizobium pachyrhizi PAC48T	90.6	89.5	97.5
Bradyrhizobium denitrificans LMG8443T	89.8	87.9	98.4	Bradyrhizobium paxllaeri LMTR21T	89.5	90.2	97.8
Bradyrhizobium diazoefficiens USDA110T	94.9	95.1	99.2	Bradyrhizobium retamae Ro19T	88.4	89.1	98.1
Bradyrhizobium elkanii USDA76T	91.1	89.9	97.5	Bradyrhizobium rifense CTAW71T	93.7	92.4	99.3
Bradyrhizobium embrapense CNPSo 2833T	90.6	90.4	97.8	Bradyrhizobium ripae WR4T	na	89.6	97.5‡
Bradyrhizobium erythrophlei CCBAU 53325T	na	89.5	98.1‡ (94)	Bradyrhizobium sacchari BR10280T	93.7	93.4	98.8‡(96)
Bradyrhizobium ferriligni CCBAU 51502T	na	89.7	95.6 (94)	Bradyrhizobium shewense ERR11T	95.7	94.6	99.8
Bradyrhizobium forestalis NPA54BT	93.3	93.4	99.7‡	Bradyrhizobium stylosanthis BR446T	94.3	94.0	98.8 (93)
Bradyrhizobium ganzhouense CCBAU101088T	na	93.4	99.1 (97)	Bradyrhizobium subterraneum 58 2-1T	na	93.0	99.7 (95)
Bradyrhizobium guangdongense CCBAU51649T	na	91.2	99.1 (90)	Bradyrhizobium tropiciagri CNPSo1112T	91.2	90.3	97.5
Bradyrhizobium guangxiense CCBAU53363T	na	92.9	99.4 (89)	Bradyrhizobium valentinum LMG27619T	88.8	88.2	97.7
Bradyrhizobium huanghuaihaiense CCBAU23303T	94.3	94.4	99.1	Bradyrhizobium vignae 7-2T	93.1	93.3	98.9 (92)
Bradyrhizobium icense HAMBI 3584T	88.8	89.6	97.8	Bradyrhizobium viridifuturi SEMIA690T	91.2	89.8	97.8
Bradyrhizobium ingae HAMBI3600T	na	93.1	98.5 (96)	Bradyrhizobium yuanmingense CCBAU10071T	93.7	93.6	99.6
Bradyrhizobium iriomotense EK05T	92.4	92.5	98.6

*Short sequences.

†Two concatenated genes: recA and glnII (Fig. S7); five concatenated genes: atpD, glnII, gyrB, recA and rpoB (Fig. 1).

‡16S rRNA gene similarities calculated using sequences from GenBank as reference sequences not available inEzBioCloud database [8].