Table 2.
Lead association signals with anti-KSHV IgG antibody levels.
| Trait | Chr:Pos(b37) | Variant | Mapped gene(s)a | Consequencea | EA | EAF (%) | p | β (95% CI) |
|---|---|---|---|---|---|---|---|---|
| ORF73 | 5:37832167 | rs114429578 | GDNF | Intergenic | T | 3.1 | 4.60 × 10−08 | 0.36 (0.23–0.49) |
| 6:32584693 | rs510205 | HLA-DQA1 | Intergenic | G | 9.4 | 5.53 × 10−08 | 0.21 (0.14–0.29) | |
| K10.5 | 6:31262619 | rs111664408 | HLA-B/ HLA-C | Intergenic | G | 10.6 | 6.64 × 10−09 | −0.22 (−0.29 to −0.15) |
| 10:124833806 | rs10794590 | ACADSB | Intergenic | T | 25.7 | 4.59 × 10−08 | −0.14 (−0.19 to −0.09) |
EA effect allele, EAF effect allele frequency.
aAnnotated using Ensembl VEP.