Table-2.
Primers sequences, target genes, amplicon sizes, and cycling conditions.
| Target gene | Primers sequences | Amplified segment (bp) | Primary denaturation | Amplification (35 cycles) | Final extension | Reference | ||
|---|---|---|---|---|---|---|---|---|
| Secondary denaturation | Annealing | Extension | ||||||
| blaTEM | ATCAGCAATAAACCAGC | 516 | 94°C 5 min | 94°C 30 sec | 54°C 40 sec | 72°C 45 sec | 72°C 10 min | [18] |
| CCCCGAAGAACGTTTTC | ||||||||
| blaSHV | AGGATTGACTGCCTTTTTG | 392 | 94°C 5 min | 94°C 30 sec | 54°C 40 sec | 72°C 40 sec | 72°C 10 min | |
| ATTTGCTGATTTCGCTCG | ||||||||
| blaOXA-1 | TCAACTTTCAAGATCGCA | 609 | 94°C 5 min | 94°C 30 sec | 54°C 40 sec | 72°C 45 sec | 72°C 10 min | |
| GTGTGTTTAGAATGGTGA | ||||||||
| ampC | TTCTATCAAMACTGGCARCC | 550 | 94°C 5 min | 94°C 30 sec | 50°C 40 sec | 72°C 45 sec | 72°C 10 min | [19] |
| CCYTTTTATGTACCCAYGA | ||||||||
| blaCTX-M | ATG TGC AGY ACC AGT AAR GTK ATG GC TGG GTR AAR TAR GTS ACC AGA AYC AGC GG | 593 | 94°C 5 min | 94°C 30 sec | 54°C 40 sec | 72°C 45 sec | 72°C 10 min | [20] |