Table-1.
Primer sets used to amplify fragments of 16S rRNA, enterotoxins, and virulence factors genes in S. aureus.
Primer Name | Sequence (5’-3’) | Amplified product size (bp) | Annealing Temperature | No. of cycles | Reference |
---|---|---|---|---|---|
16S rRNA | GTA GGT GGC AAG CGT TAT CC CGC ACA TCA GCG TCA G |
228 | 50°C/50 s | 40 cycles | [16] |
sea | GCA GGG AAC AGC TTT AGG C GTT CTG TAG AAG TAT GAA ACA CG |
521 | 48°C/1 min 44°C/1 min (reaction A) | 15 cycles | |
seb | ACA TGT AAT TTT GAT ATT CGC ACT G TGC AGG CAT CAT GTC ATA CCA |
667 | 20 cycles | [17] | |
sec | CTT GTA TGT ATG GAG GAA TAA CAA TGC AGG CAT CAT ATC ATA CCA |
284 | [16] | ||
sed | CCA ATA ATA GGA GAA AAT AAA AG ATT GGT ATT TTT TTT CGT TC |
278 | 57°C/2 min (reaction B) | 35 cycles | [18] |
see | AGG TTT TTT CAC AGG TCA TCC CTT TTT TTT CTT CGG TCA ATC |
209 | [19] | ||
tsst | GCT TGC GAC AAC TGC TAC AG TGG ATC CGT CAT TCA TTG TTA T |
559 | 50°C/50 s | 40 cycles | [16] |
nuc | GCG ATT GAT GGT GAT ACG GTT AGC CAA GCC TTG ACG AAC TAA AGC |
270 | of 50°C/1 min | 40 cycles | [20] |
mecA | AAA ATC GAT GGT AAA GGT TGG C ATC TGT ACT GGG TTA ATC |
533 | of 50°C/1 min | 40 cycles | [21] |
S. aureus: Staphylococcus aureus