Table 4.
Oligonucleotides used in this study
| Primer | Sequence (5′–3′)a,b | Application |
|---|---|---|
| gan1D N-ter | 5′-TATAGTCATGATACATCACCACCACCACCATGAGCATCGTCATCTTAAAC-3′ | Cloning into pET9d |
| gan1D C-ter | 5′-TATACGGATCCCTACAGCTCGGCACCGTTC-3′ | |
| celA N-ter | 5′-TATACCCATGGGGCATCATCATCACCACCACAAACGATTGAAAATG-3′ | |
| celA C-ter | 5′-ATGCGAGATCTTTAGTTTCCAGCTACTGTTTTG-3′ | |
| galP N-ter | 5′-TATACCCATGGGGCACCATCATCATCATCATGCTTGGAACGTGTATGCGTATCC-3′ | |
| galP C-ter | 5′-TATCAGGATCC TCATGGCGTGTTGACCTCATAATTGC-3′ | |
| galT2 N-ter | 5′-ATATATCCATGGTGCATCATCATCATCATCATAAAGTGGCGATCGTCGAT-3′ | |
| galT2 °C-ter | 5′-TATATAGGATCCTCAGCGCGCCTGTACTTTTTT-3′ | |
| galE2 N-ter | 5′-TATCGCCATGGGGCATCATCATCATCATCAT GATGACGCCAAACAA-3′ | |
| galE2 °C-ter | 5′-ATGCGAGATCTTACTTCTTCAGTTCTG-3′ | |
| Fwr gan1D | 5′-GTTCCCGCCTGAGTTTTT-3′ | Real-time RT-PCR |
| Rev gan1D | 5′-CCTTTTCCATCTTCGTTCCA-3′ | |
| Fwr galE2 | 5'-CTCTTCTTCGTCCGATGA-3′ | |
| Rev galE2 | 5'-GTCCACCAGCTGAAAATCT-3′ | |
| Fwr galP | 5′-CGGCAGGCGAATATTGATG-3′ | |
| Rev galP | 5′-CAAATTCCGCTTCCGTCAAC-3′ | |
| Fwr ptsA | 5′-GTTTGGCAACGCCTTGAAA-3′ | |
| Rev ptsA | 5′-GCCTGCTTGCTCCATCACAT-3′ | |
| Fwr ptsD | 5′-CGCTCAAAGAGGAAGGAAA-3′ | |
| Rev ptsD | 5′-CCGATGACGACTTGAAACTG-3′ | |
| Fwr mltE | 5′-ACGAGACGTTTGCGAAGCT-3′ | |
| Fwr mltE | 5′-ATTTTGCCGCCCGTATAG-3′ | |
| Fwr citC | 5′-GACTTGCGGCCGTGTTC-3′ | |
| Rev citC | 5'-GAAGACATCTACGCTGGCATT-3′ | |
| Fwr celB | 5′-ACAAGCTTGCTAGTGACGAA-3′ | |
| Rev celB | 5′-GTGGGCCAATAAGAATGAC-3′ | |
| Fwr celC | 5′-GATTCAAGAAGCAGAGCAAG-3′ | |
| Rev celC | 5′-TGACATGACATGGTCTTCC-3′ | |
| Fwr celD | 5′-CTAAGCAAAGTTCTCGTTCC-3′ | |
| Rev celD | 5′-TTTCACTCATCACCTTGTCC-3′ | |
| Fwr celA | 5′-GGTTTACCCACAATGAACC-3′ | |
| Rev celA | 5′-CATCGTATGGTAAGCCACTT-3′ | |
| Fwr celR | 5′-CACCGGTGTACCACTTAATC-3′ | |
| Rev celR | 5′-GAGTTCGTGAGTGATGTAACG-3′ | |
| Fwr galE2 | 5′-CATAAAAGCGAAATGGCAGTC-3′ | DNA-binding assays |
| Cy5 Rev galE2 | 5′-CTTATCAATCGGCGGCTTG-3′ |
aBoldface bases indicate engineered restriction sites.
bCy5, cyanine 5′-end–labeled primers.