. 2020 Jul 2;11(7):737. doi: 10.3390/genes11070737

Table 2.

Genetic diversity parameters assessed for 36 SSR loci.

Locus	Allele Range (bp)	N	MD	N_a	N_e	N_ar	H_e	H_O	F	HW	F null	PIC	P_{(ID)unrelated}	P_(ID)sib
VVS2	123–153	127	0	12	4.65	10.51	0.79	0.78	0.007	NS	0.0063	0.758	0.073	0.376
VVMD7	231–261	127	0	10	3.66	8.70	0.73	0.80	−0.095	NS	−0.0436	0.685	0.116	0.416
VVMD27	171–190	127	0	8	3.49	6.94	0.71	0.80	−0.115	NS	−0.0583	0.67	0.126	0.425
ssrVrZAG62	179–203	127	0	10	5.34	8.97	0.81	0.89	−0.095	NS	−0.0484	0.789	0.058	0.358
ssrVrZAG79	234–258	127	0	11	5.76	10.45	0.83	0.86	−0.039	NS	−0.0205	0.804	0.053	0.35
VVMD5	218–242	127	0	10	5.08	9.36	0.80	0.84	−0.049	NS	−0.0258	0.78	0.062	0.364
VVMD25	237–265	127	0	10	3.77	8.07	0.74	0.74	−0.007	NS	−0.0024	0.691	0.115	0.411
VVMD28	216–276	127	0	12	8.20	11.09	0.88	0.94	−0.067	ND	−0.0329	0.866	0.027	0.318
VVMD32	240–274	127	0	9	5.07	8.47	0.80	0.91	−0.128	NS	−0.0627	0.778	0.064	0.365
VViq52	101–111	126	0.79	5	2.78	4.71	0.64	0.71	−0.103	NS	−0.0544	0.57	0.2	0.48
VVIp31	192–216	127	0	12	7.18	11.18	0.86	0.95	−0.098	ND	−0.0476	0.845	0.035	0.328
VVip60	321–348	124	2.36	12	4.74	10.61	0.79	0.82	−0.032	NS	−0.0184	0.76	0.074	0.374
VMC1b11	185–215	125	1.57	10	4.88	9.62	0.80	0.85	−0.066	NS	−0.0362	0.774	0.063	0.368
VMC4f3	185–246	127	0	15	4.27	12.38	0.77	0.76	0.013	NS	0.0066	0.741	0.079	0.387
VVih54	166–205	126	0.79	12	4.11	10.15	0.76	0.81	−0.07	NS	−0.0341	0.732	0.084	0.393
VViv67	354–406	126	0.79	12	5.25	10.28	0.81	0.83	−0.03	NS	−0.0152	0.785	0.061	0.361
VVib01	307–325	127	0	5	2.79	5.00	0.64	0.67	−0.044	NS	−0.0205	0.58	0.19	0.477
VVMD24	224–235	127	0	6	2.55	5.92	0.61	0.61	0.003	NS	0.0046	0.559	0.202	0.496
VVMD21	244–281	126	0.79	7	2.60	5.92	0.62	0.71	−0.148	NS	−0.0712	0.57	0.193	0.491
VVIn16	167–177	127	0	5	2.45	4.98	0.59	0.58	0.03	NS	0.0116	0.523	0.235	0.513
VVIn73	272–285	127	0	7	1.47	5.14	0.32	0.32	0.011	ND	0.0095	0.287	0.496	0.715
VViv37	153–183	106	16.54	13	3.93	11.33	0.75	0.79	−0.063	NS	−0.0422	0.721	0.09	0.399
Vchr8b	115–169	125	1.57	15	7.41	13.59	0.87	0.69	0.205	**	0.1177	0.852	0.031	0.325
Vchr10b	145–154	126	0.79	3	2.45	3.00	0.59	0.66	−0.112	NS	−0.0525	0.505	0.254	0.517
Vchr14b	188–239	125	1.57	13	4.09	11.63	0.76	0.32	0.576	***	0.4073	0.728	0.087	0.394
Vchr4a	200–224	115	9.45	6	2.67	5.08	0.63	0.64	−0.03	NS	−0.0106	0.552	0.214	0.491
Vchr9a	108–142	126	0.79	8	4.26	7.36	0.77	0.83	−0.079	NS	−0.0355	0.73	0.09	0.39
Vchr16a	118–186	127	0	8	1.98	7.32	0.50	0.49	0.014	NS	0.012	0.457	0.293	0.576
Vchr19a	143–170	118	7.09	8	3.13	7.27	0.68	0.71	−0.047	NS	−0.0305	0.639	0.144	0.446
Vchr17a	197–205	119	6.3	2	1.83	2.00	0.45	0.38	0.168	NS	0.0914	0.351	0.401	0.623
Vchr18a	170–210	122	3.94	10	4.72	8.28	0.79	0.75	0.043	NS	0.0211	0.761	0.072	0.374
Vchr1b	112–128	122	3.94	4	2.85	3.97	0.65	0.61	0.065	NS	0.0277	0.578	0.194	0.474
Vchr7b	189–205	121	4.72	4	3.74	4.00	0.73	0.80	−0.094	NS	−0.0447	0.683	0.122	0.414
Vchr11b	169–181	109	14.17	6	4.05	5.38	0.75	0.78	−0.036	NS	−0.0188	0.708	0.106	0.4
Vchr12a	141–162	121	4.72	6	2.98	5.40	0.67	0.72	−0.082	NS	−0.0417	0.605	0.172	0.461
Vchr2b	130–139	62	51.18	4	1.64	4.00	0.39	0.37	0.047	ND	0.0171	0.348	0.414	0.659
Mean		122	3.718	9	3.9	7.72	0.70	0.71	−0.015		−0.0038	0.66
Over loci													1.19 × 10⁻³⁴	5.29 × 10⁻¹⁴

** significant at the 1 % level, *** significant at the 0.1 % level, NS = not significant, ND = not done. N = number of observed accessions; MD =% missing data; Na = number of alleles, Ne = effective number of alleles, Ar = allelic richness, He = expected heterozygosity, Ho = observed heterozygosity, F = fixation index, HW = exact test of departure from Hardy–Weinberg equilibrium, F null = estimated frequency of null alleles, PIC = polymorphic information content, P(ID) probability of identity = unrelated and sib .