Table 6. Test-set COD for the side-chain neural network after it has been trained with individual features removed.
Values are the mean COD after training with 100 different random-number seeds with one standard error in parentheses.
| Missing side-chain feature | Test-set COD | Decrease |
|---|---|---|
| No missing feature | 0.6073 (2) | 0.0000 |
| Minimum difference density Z-score | 0.6038 (2) | 0.0035 |
| Maximum atom overlap | 0.6027 (2) | 0.0046 |
| Maximum B-factor change Z-score | 0.6021 (2) | 0.0052 |
| Minimum best density Z-score | 0.6000 (2) | 0.0073 |
| Mean best density Z-score | 0.5968 (2) | 0.0105 |
| Maximum B-factor Z-score | 0.5901 (2) | 0.0172 |
| Resolution | 0.5874 (2) | 0.0199 |
| Rotamer score | 0.5835 (2) | 0.0238 |
| Map-to-model correlation | 0.5566 (2) | 0.0507 |