Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2020 Aug 3;20:365. doi: 10.1186/s12870-020-02564-4

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

PMC Copyright notice

Fig. 4 — Co-localization of SNP/InDel candidates for berry size and DE genes between large and small berry segregants in V. vinifera chromosomes. Thirty-eight candidate polymorphisms for berry weight were identified using a search of structural variants based on a transcriptome experiment [20]. SNPs and InDels are represented in blue and red, respectively. A subset of candidate genes associated with berry weight was also co-localized. Significantly correlated DE genes with PCA-1 are represented in the plot. DE genes up-regulated in SB segregants are represented in orange; DE genes up-regulated in LB segregants are in cyan. DE genes are Vitvi03g00306: F-box protein At2g16365; Vitvi03g01483: AMP-activated protein kinase gamma regulatory subunit putative; Vitvi03g00124: pathogenesis-related protein 5; Vitvi03g01597: secretory protein putative; Vitvi06g00679: GCN5-related N-acetyltransferase (GNAT) family protein; Vitvi06g01917: lichenase; Vitvi08g01801: putative mitochondrial 2-oxoglutarate/malate carrier protein; Vitvi09g01229: anthranilate N-benzoyltransferase protein 2; Vitvi09g00045: 18.6 kDa class III heat shock protein; Vitvi14g00270: copper chaperone; Vitvi14g02028: probable galacturonosyltransferase 13; Vitvi15g00960: O-acyltransferase WSD1; Vitvi17g01557: DEAD-box ATP-dependent RNA helicase 30; Vitvi17g00658: C2H2-type zinc finger transcription factor; Vitvi17g00643: LON peptidase N-terminal domain and RING finger protein 1; Vitvi17g01451: germin-like protein subfamily T member 1; Vitvi17g00070: protein RUPTURED POLLEN GRAIN 1; Vitvi17g01183: probable metal-nicotianamine transporter YSL7; Vitvi17g01251: expansin-A15; Vitvi19g00111: epidermis-specific secreted glycoprotein EP1; Vitvi19g00252: 5′-AMP-activated protein kinase gamma subunit