Table 1.

Summary data for the integration of RNAseq and methylation profiling data

Category	Number	NOY-1	NOY-1 CisR
M probes	844,264	0.951
M prom&	34,192	0.965
M genes&	27,021	0.952
M genes & prom&	24,067	0.437	0.417
M diff genes vs M diff prom&	24,067	0.653
R genes (> 0 reads)	29,167	0.949
R genes (> = 10 reads)#	19,157	0.947
R diff genes (fourfold)#	975	Up: 339 Down: 636
R diff (all/fourfold)# vs M diff genes&	16,178/790	0.004/0.095
R diff (all/fourfold)# vs M diff prom&	15,829/758	− 0.044/− 0.013

M methyl CpG beta, R RNAseq read counts, diff difference between the methyl beta values of wild type NOY-1 and NOY-1 CisR cells or the ratio of the normalized RNAseq read counts. Pearson correlations are provided. ^&At least 3 probes available within gene or promoter region. ^#At least 10 RNAseq reads were mapped to individual genes in either or both experiments together