. Author manuscript; available in PMC: 2020 Aug 3.

Published in final edited form as: J Mol Biol. 2011 Jan 7;406(4):620–630. doi: 10.1016/j.jmb.2010.12.044

Table 1.

Various RMSD values for the E2^Ubc9–E3^RanBP2–SUMO–Target^RanGAP1 and E2^Ubc9–SUMO–Target^RanGAP1 complex trajectories

	E2^Ubc9–E3^RanBP2–SUMO–Target^RanGAP1	E2^Ubc9–SUMO–Target^RanGAP1
Overall RMSD (Å)	2.4±0.5 (3.6–0.6)^a	2.2±0.4 (4.2–0.6)
	2.1±0.4 (3.3–0.6)^b
Individual chain-based RMSD (Å)
SUMO	1.3±0.2 (1.9–0.5)	1.5±0.2 (2.2–0.5)
E2^Ubc9	1.9±0.5 (2.8–0.5)	1.3±0.2 (2.1–0.6)
Target^RanGAP1	1.3±0.2 (2.0–0.6)	1.5±0.3 (2.5–0.5)
E3^RanBP2	3.2±0.9 (5.7–0.6)	—

Each entry corresponds to mean±SD of the RMSD values. The maximum and minimum values of the data set are indicated in parentheses.

The RMSD is calculated over the trajectory of E2^Ubc9–E3^RanBP2–SUMO–Target^RanGAP1.

Before calculating the RMSD of the E2^Ubc9–E3^RanBP2–SUMO–Target^RanGAP1 complex, E3^RanBP2 is extracted from the system. Thus, the reported results are calculated over three monomers: E2^Ubc9–SUMO–Target^RanGAP1.