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. 2020 Jul 27;11:706. doi: 10.3389/fgene.2020.00706

TABLE 1.

Various features of SSRMMD and existing software programs for mining perfect SSRs.

Software Year Portability Dependencea Function
SSRIT 2001 Windows/Linux No Mining SSR feature loci
TROLL 2002 Windows/Linux Staden Mining SSR feature loci
MISA 2003 Windows/Linux No Mining SSR feature loci
MfSAT 2011 Windows No Mining SSR feature loci
GMATo 2013 Windows/Linux No Mining SSR feature loci
ProGeRF 2015 Linux No Mining SSR feature loci
CandiSSR 2016 Linux MISA, BLAST, Primer3, Clustalw Developing polymorphic SSRs
FullSSR 2016 Windows/Linux BioPerl, Bio:Tools:Run: Primer3 Mining SSR feature loci
GMATA 2016 Windows/Linux Primer3, e-PCR Developing polymorphic SSRs
SA-SSR 2016 Linux No Mining SSR feature loci
Kmer-SSR 2017 Linux No Mining SSR feature loci
PERF 2017 Windows/Linux tqdm, biopython Mining SSR feature loci
IDSSR 2019 Linux SSRIT, BLAST, Primer3 Developing polymorphic SSRs
SSRMMD this Windows/Linux No Developing polymorphic SSRs

Note. SSRMMD, Simple Sequence Repeat Molecular Marker Developer. aDependence on additional programs or modules.