TABLE 1.
Software | Year | Portability | Dependencea | Function |
SSRIT | 2001 | Windows/Linux | No | Mining SSR feature loci |
TROLL | 2002 | Windows/Linux | Staden | Mining SSR feature loci |
MISA | 2003 | Windows/Linux | No | Mining SSR feature loci |
MfSAT | 2011 | Windows | No | Mining SSR feature loci |
GMATo | 2013 | Windows/Linux | No | Mining SSR feature loci |
ProGeRF | 2015 | Linux | No | Mining SSR feature loci |
CandiSSR | 2016 | Linux | MISA, BLAST, Primer3, Clustalw | Developing polymorphic SSRs |
FullSSR | 2016 | Windows/Linux | BioPerl, Bio:Tools:Run: Primer3 | Mining SSR feature loci |
GMATA | 2016 | Windows/Linux | Primer3, e-PCR | Developing polymorphic SSRs |
SA-SSR | 2016 | Linux | No | Mining SSR feature loci |
Kmer-SSR | 2017 | Linux | No | Mining SSR feature loci |
PERF | 2017 | Windows/Linux | tqdm, biopython | Mining SSR feature loci |
IDSSR | 2019 | Linux | SSRIT, BLAST, Primer3 | Developing polymorphic SSRs |
SSRMMD | this | Windows/Linux | No | Developing polymorphic SSRs |
Note. SSRMMD, Simple Sequence Repeat Molecular Marker Developer. aDependence on additional programs or modules.