Antibodies |
SSRP1 |
Santa Cruz Biotechnology |
Cat#sc-74536; RRID:AB_1129655 |
SPT16 |
Dr. Hasan Yardimci |
N/A |
Purified Mouse IgG1 |
BioLegend |
Cat#400101 |
GAPDH |
Cell Signaling Technology |
Cat#2118; RRID:AB_561053 |
SPT16 |
Cell Signaling Technology |
Cat#12191; RRID: AB_2732025 |
Cas9 |
Novus Biologicals |
Cat#7A9-3A3 |
SSRP1 |
BioLegend |
Cat#609701; RRID:AB_315730 |
PE anti-human CD25 |
BioLegend |
Cat#302606; RRID:AB_314276 |
FITC anti-human CD55 |
BioLegend |
Cat#311306; RRID:AB_314863 |
FITC anti-human CD59 |
BioLegend |
Cat#304706; RRID:AB_2076126 |
PE Mouse IgG1 κ isotype control |
BioLegend |
Cat#400112; RRID:AB_2847829 |
FITC Mouse IgG1, κ Isotype control |
BioLegend |
Cat#400108 |
FITC Mouse IgG2a, κ isotype control |
BioLegend |
Cat#400208 |
H3K9me2 |
Abcam |
Cat#ab1220; RRID:AB_449854 |
H3K27ac |
Abcam |
Cat#ab4729; AB_2118291 |
Chemicals, Peptides, and Recombinant Proteins |
S. pyogenes Cas9 |
QB3-Berkeley Macrolab |
N/A |
S. pyogenes dCas9 |
QB3-Berkeley Macrolab |
N/A |
S. pyogenes Cas9-BirA* |
This manuscript |
N/A |
S. pyogenes dCas9-BirA* |
This manuscript |
N/A |
Recombinant Human FACT |
Dr. Danny Reinberg |
N/A |
Critical Commercial Assays |
HiScribe™ T7 High Yield RNA Synthesis Kit |
New England Biolabs |
Cat#E2040S |
Deposited Data |
Amplicon-NGS Raw Sequence Reads |
This manuscript |
SRA:PRJNA634106 |
Oligonucleotides |
SMARTpool ON-TARGETplus SUPT16H siRNA |
Horizon Discovery |
Cat#L-009517-00 |
ON-TARGETplus SSRP1 siRNA |
Horizon Discovery |
Cat#J-011783-07 |
ON-TARGETplus Nontargeting Pool |
Horizon Discovery |
Cat#D-001810-10 |
Recombinant DNA |
pMJ915 |
Lin et al., 2014 |
Addgene Plasmid #69090 |
pCRISPRia-v2 |
Horlbeck et al., 2016 |
Addgene Plasmid #84832 |
Software and Algorithms |
Cortado Amplicon-NGS Analysis |
https://github.com/staciawyman/cortado |
N/A |