Table 1.
Summary of the marker genes and immune cells in the TME.
| Cell type | Selected marker genes |
|---|---|
| B cells | BLK, CD19, FCRL2, MS4A1, KIAA0125, TNFRSF17, TCL1A, SPIB, PNOC |
| CD45+ cells | PTRPC |
| Cytotoxic cells | PRF1, GZMA, GZMB, NKG7, GZMH, KLRK1 |
| Dendritic cells | KLRB1, KLRD1, CTSW, GNLY, CCL13, CD209, HSD11B1 |
| Exhausted CD8+ cells | LAG3, CD244, EOMES, PTGER4 |
| Macrophages | CD68, CD84, CD163, MS4A4A |
| Mast cells | TPSB2, TPCAB1, CPA3, MS4A2, HDC |
| Neutrophils | FPR1, SIGLEC5, CSF3R, FCAR, FCGR3B, CEACAM3, S100A12 |
| NK CD56dim cells | KIR2DL3, KIR2DL1, KIR2DL2, IL21R |
| NK cells | XCL1, XCL2, NCR1 |
| T cells | CD6, CD3D, CD3E, SH3E, SH2D1A, TRAT1, CD3G |
| Th1 cells | TBX21 |
| Tregs | FOXP3 |
| CD8+ T cells | CD8A, CD8B |
NK natural killer; Th1 type 1T helper; Tregs regulatory T cells.