Table 1.
GenBank and culture collection accession numbers of species included in the present phylogenetic study. Newly generated sequences are shown in bold.
| Species | Strain/Voucher no. | GenBank accession no. | |||
|---|---|---|---|---|---|
| LSU | SSU | ITS | tef1–α | ||
| Acericola italica | MFLUCC 13-0609 | MF167429 | MF167430 | MF167428 | – |
| Allophaeosphaeria muriformia | MFLUCC 13-0277 | KX910089 | KX950400 | KX926415 | – |
| Alloneottiosporina thailandica | MFLUCC 15-0576 | – | – | – | – |
| Amarenographium ammophilicola | MFLU 17-2571 | MN017847 | MN017913 | MN047087 | MN077065 |
| Amarenomyces dactylidis | KUMCC 18-0154 | MK356345 | MK356359 | MK356371 | – |
| Arezzomyces cytisi | MFLUCC 15-0649 | KT306950 | KT306954 | KT306947 | – |
| Banksiophoma australiensis | CBS 142163 | KY979794 | – | KY979739 | KY979889 |
| Bhagirathimyc es himalayensis | AMH 10127 | MK836020 | MN121697 | MK836021 | – |
| Bhatiellae rosae | MFLUCC 17-0664 | MG828989 | MG829101 | MG828873 | – |
| Brunneomurispora lonicerae | KUMCC 18-0157 | MK356346 | MK356360 | MK356373 | MK359065 |
| Camarosporioides phragmitis | MFLUCC 13-0365 | KX572345 | KX572350 | KX572340 | KX572354 |
| Chaetosphaeronema achilleae | MFLUCC 16-0476 | KX765266 | – | KX765265 | – |
| C. hispidulum | CBS 216.75 | KF251652 | EU754045 | KF251148 | KF253108 |
| Dactylidina shoemaker | MFLUCC 14-0963 | MG829003 | MG829114 | MG828887 | MG829200 |
| Dematiopleospora cirsii | MFLUCC 13-0615 | KX274250 | – | KX274243 | KX284708 |
| D. mariae | MFLUCC 15-0612 | KJ749653 | KJ749652 | KX274244 | KJ749655 |
| Didymocyrtis xanthomendozae | CBS 129666 | – | – | KP170651 | KP170677 |
| Diederichomyces ficuzzae | CBS 128019 | JQ238616 | – | KP170647 | KP170673 |
| Dlhawksworthia clematidicola | MFLUCC 17-0693 | MG829038 | MG829144 | MG828929 | – |
| D. lonicera | MFLUCC 14-0955 | MG829012 | MG829121 | MG828902 | MG829203 |
| Edenia gomezpompae | JLCC 34533 | – | – | KC193601 | – |
| LVPEI 3225 | – | – | KU578033 | – | |
| Elongaticollum hedychii | MFLUCC 18-1638 | MT321810 | MT321803 | MT321796 | MT328753 |
| E. hedychii | MFLUCC 17-2653 | MT321811 | MT321804 | MT321797 | MT328754 |
| NCYUCC 19-0286 | MT321812 | MT321805 | MT321798 | MT328755 | |
| Embarria clematidis | MFLUCC 14-0652 | KT306953 | KT306956 | KT306949 | – |
| MFLUCC 14-0976 | MG828987 | MG829099 | MG828871 | MG829194 | |
| Equiseticola fusispora | MFLUCC 14-0522 | KU987669 | KU987670 | KU987668 | MG520895 |
| Galiicola baoshanensis | HKAS 102234 | MK356348 | MK356362 | MK356374 | MK359066 |
| G. pseudophaeosphaeria | MFLU 14-0524 | – | – | – | MG520896 |
| Hydeomyces desertipleosporoides | SQUCC 15259 | MK290839 | MK290843 | MK290841 | MK290848 |
| SQUCC 15260 | MK290840 | MK290844 | MK290842 | MK290849 | |
| Hydeopsis verrucispora | SD 2016-5 | MK522498 | MK522504 | MK522508 | MK523388 |
| Italica achilleae | MFLUCC 14-0955 | MG829012 | MG829121 | MG828902 | MG829203 |
| I. luzulae | MFLUCC 14-0932 | KT306951 | – | – | – |
| Jeremyomyces labinae | CBS 144617 | MK442529 | – | MK442589 | MK442695 |
| Juncaceicola italica | MFLUCC 13-0750 | – | – | KX500110 | MG520897 |
| J. luzulae | MFLUCC 13-0780 | KX449530 | KX449531 | KX449529 | – |
| Kwanghwaensis miscanthi | FU31017 | MK503823 | MK503829 | MK503817 | MT009126 |
| Leptosphaeria doliolum | CBS 505.75 | GU301827 | GU296159 | JF740205 | GU349069 |
| Leptospora rubella | CPC 11006 | DQ195792 | DQ195803 | DQ195780 | – |
| L. thailandica | MFLUCC 16-0385 | KX655549 | KX655554 | KX655559 | KX655564 |
| Longispora clematidis | MFLU 15–1277 | ||||
| Loratospora aestuarii | CBS 117592 | – | – | MH863024 | – |
| Mauginiella scaettae | CBS 239.58 | MH869303 | – | MH857770 | – |
| Melnikia anthoxanthii | MFLUCC 14-1011 | KU848204 | KU848205 | – | – |
| Murichromolaenicola chiangraiensis | MFLUCC 17-1488 | MN994559 | MN994605 | MN994582 | MN998163 |
| M. chromolaenae | MFLUCC 17-1489 | MN994560 | MN994606 | MN994583 | MN998164 |
| Muriphaeosphaeria galatellae | MFLUCC 14-0614 | KT438329 | KT438331 | KT438333 | MG520900 |
| MFLUCC 15-0769 | KT438330 | KT438332 | – | – | |
| Neoophiobolus chromolaenae | MFLUCC 17-1467 | MN994562 | MN994606 | MN994583 | MN998164 |
| N. chromolaenae | MFLUCC 17-1449 | MN994561 | MN994607 | MN994584 | MN998165 |
| Neosetophoma sp. | MFLUCC 17-0844 | MG829035 | MG829141 | MG828926 | MG829219 |
| N. aseptata | CBS 145363 | MK540024 | – | MK539953 | – |
| N. camporesii | MFLUCC 15-0682 | KU302778 | – | KU302779 | – |
| N. clematidis | MFLUCC 13-0734 | KP684153 | KP684154 | KP744450 | – |
| N. garethjonesii | MFLUCC 14-0528 | – | KY501126 | – | KY514402 |
| N. guiyangensis | GZ13 | MH018132 | MH018136 | MH018134 | MH051889 |
| N. italica | MFLU 14-0809 | KP711361 | KP711366 | KP711356 | – |
| N. lonicerae | KUMCC 18-0155 | MK356349 | MK356363 | MK356375 | MK359067 |
| N. lunariae | CPC 26671 | KX306789 | – | KX306763 | – |
| N. miscanthi | MFLU 18-2675 | MK503826 | MK503832 | MK503820 | – |
| N. phragmitis | CBS 145364 | MK540025 | – | MK539954 | MK540148 |
| N. poaceicola | MFLUCC 16-0886 | KY550382 | KY550383 | KY568986 | – |
| MFLUCC 18-1632 | MT321809 | MT321802 | MT321795 | – | |
| N. rosae | MFLUCC 17-0844 | MG829035 | MG829141 | MG828926 | MG829219 |
| N. rosaena | MFLUCC 17-0768 | MG829037 | MG829143 | MG828928 | – |
| N. rosarum | MFLU 17-0308 | MG829036 | MG829142 | MG828927 | – |
| N. salicis | MFLU 17-0118 | MK608026 | – | MK608025 | – |
| N. samarorum | CBS 138.96 | KF251664 | GQ387517 | MH862569 | KF253119 |
| N. sambuci | CBS 145365 | MK540026 | – | MK539955 | MK540149 |
| N. shoemakeri | MFLU 16-1606 | MG602199 | MG602201 | MG602203 | MG844352 |
| MFLUCC 17-0780 | MG844348 | MG844350 | MG844346 | MG844352 | |
| N. tienshanensis | MFLUCC 17-0844 | MG829035 | MG829141 | MG828926 | MG829219 |
| N. xingrensis | GZAAS18 0100 | MH018133 | – | MH018135 | – |
| Neosphaerellopsis thailandica | CPC 21659 | KP170721 | – | KP170652 | KP170678 |
| Neostagonospora caricis | CBS 135092 | KF251667 | – | KF251163 | – |
| N. phragmitis | MFLUCC 16-0493 | KX910090 | KX950401 | KX926416 | MG520902 |
| Neostagonosporella sichuanensis | MFLUCC 18-1228 | – | – | – | MK313854 |
| MFLUCC 18-1231 | – | – | – | MK313851 | |
| Neosulcatispora agaves | CPC 26407 | KT950867 | – | KT950853 | – |
| Nodulosphaeria multiseptata | MFLUCC 15-0078 | KY496728 | – | KY496748 | – |
| N. scabiosae | MFLUCC 14-1111 | KU708846 | KU708842 | KU708850 | KU708854 |
| Ophiobolopsis italica | MFLUCC 17-1791 | MG520959 | MG520977 | MG520939 | MG520903 |
| Ophiobolus disseminans | MFLUCC 17-1787 | MG520961 | MG520980 | MG520941 | MG520906 |
| O. rossicus | MFLU 17-1639 | MG520964 | MG520983 | MG520944 | MG520909 |
| Ophiosimulans tanaceti | MFLUCC 14-0525 | KU738891 | KU738892 | KU738890 | MG520910 |
| Ophiosphaerella agrostidis | MFLUCC 11-0152 | KM434281 | KM434290 | KM434271 | KM434299 |
| MFLUCC 12-0007 | KM434282 | KM434291 | KM434272 | KM434300 | |
| MFLUCC 16-0895 | MF197563 | MF351604 | MF351996 | – | |
| IGM35 | MF197563 | MF351604 | – | – | |
| MFLUCC 11-0152 | KM434281 | KM434290 | KM434271 | KM434299 | |
| O. aquatica | MFLUCC 14-0033 | KX767089 | KX767090 | KX767088 | MG520911 |
| MFLUCC 14-0033 | KX767089 | KX767090 | KX767088 | MG520911 | |
| O. herpotricha | k28 | – | – | KP690992 | KP691016 |
| KS29 | – | – | KP690986 | KP691015 | |
| O. korrae | ATCC 56289 | – | – | KC848509 | KC848515 |
| O. narmari | ATCC 64688 | – | – | KC848510 | KC848516 |
| ATCC 201719 | – | – | KC848508 | KC848514 | |
| O. taiwanensis | MFLU 18-2534 | MT321815 | MT321808 | MT321801 | MT328758 |
| O. taiwanica | NTUCC 17-024 | MN082419 | – | MN082417 | – |
| NTUCC 17-025 | MN082420 | – | MN082418 | – | |
| Paraleptosphaeria dryadis | CBS 643.86 | GU301828 | KC584632 | JF740213 | GU349009 |
| Paraleptospora chromolaenae | MFLUCC 17-1481 | MN994563 | MN994609 | MN994587 | MN998167 |
| P. chromolaenicola | MFLUCC 17-1450 | MN994564 | MN994610 | MN994588 | MN998168 |
| Paraophiobolus arundinis | MFLUCC 17-1789 | MG520965 | MG520984 | MG520945 | MG520912 |
| P. plantaginis | MFLUCC 17-0245 | KY815010 | KY815012 | KY797641 | MG520913 |
| Paraloratospora camporesii | MFLU 18-0915 | MN756637 | MN756635 | MN756639 | – |
| Paraphoma chrysanthemicola | CBS 522.66 | KF251670 | GQ387521 | KF251166 | KF253124 |
| P. radicina | CBS 111.79 | KF251676 | EU754092 | KF251172 | KF253130 |
| Parastagonospora dactylidis | MFLUCC 13-0375 | KU058722 | – | KU058712 | – |
| Parastagonosporella fallopiae | CBS 135981 | MH460545 | – | MH460543 | MH460549 |
| P. fallopiae | CCTU 1151-1 | MH460546 | – | MH460544 | MH460550 |
| Phaeopoacea muriformis | MFLUCC 17-0372 | MF611638 | MF611639 | MF611637 | – |
| P. festucae | MFLUCC 17-0056 | KY824767 | KY824769 | KY824766 | – |
| Phaeoseptoriella zeae | CBS 144614 | MK442547 | – | MK442611 | MK442702 |
| Phaeosphaeria musae | MFLUCC 11-0133 | KM434277 | KM434287 | KM434267 | KM434296 |
| P. oryzae | CBS 110110 | KF251689 | GQ387530 | KF251186 | – |
| P. papayae | CBS 135416 | – | – | MH866082 | – |
| Phaeosphaeriopsis agapanthi | CPC 26303 | KX228311 | – | KX228260 | – |
| P. agavacearum | CPC 29122 | KY173520 | – | KY173430 | – |
| P. agavensis | CBS 102206 | KY090669 | KY090693 | KY090635 | – |
| P. aloes | CBS 145367 | MK540030 | – | MK539959 | MK540153 |
| P. aloicola | CBS 145368 | MK540031 | – | MK539960 | MK540154 |
| P. amblyospora | CBS 110131 | – | – | MH862851 | – |
| P. beaucarneae | MFLU 18-2586 | MT321813 | MT321806 | MT321799 | MT328756 |
| MFLU 18-2587 | MT321814 | MT321807 | MT321800 | MT328757 | |
| P. dracaenicola | MFLUCC 11-0157 | KM434283 | KM434292 | KM434273 | KM434301 |
| P. glaucopunctata | MFLUCC 13-0265 | KJ522477 | KJ522481 | KJ522473 | MG520918 |
| P. grevilleae | CBS 145369 | MK540032 | – | MK539961 | MK540155 |
| P. nolinae | CBS 102205 | KY090667 | KY090694 | KY090637 | – |
| P. obtusispora | CBS 246.64 | JX681119 | – | KY090644 | – |
| P. omaniana | SQUCC:14333 | MT075849 | – | MT075840 | – |
| P. phacidiomorpha | CBS 198.35 | AF275496 | AF275515 | FJ462742 | – |
| P. pseudoagavacearum | CBS 145370 | MK540033 | – | MK539962 | – |
| MFLU 17-1800A | MN750592 | MN750607 | MN750613 | MN756837 | |
| P. triseptata | MFLUCC 13-0271 | KJ522479 | KJ522484 | KJ522475 | MG520919 |
| P. yuccae | MFLUCC 16-0558 | KY554481 | KY554480 | KY554482 | MG520920 |
| Piniphoma wesendahlina | CBS 145032 | MK442551 | – | MK442615 | MK442706 |
| Populocrescentia ammophilae | MFLUCC 17-0665 | MG829059 | MG829164 | MG828949 | MG829231 |
| P. rosacea | MFLU 17-0128 | MG829060 | MG829165 | – | MG829232 |
| Pseudoophiobolus achilleae | MFLU 17-0925 | MG520966 | – | MG520946 | – |
| P. galii | MFLUCC 17-2257 | MG520967 | MG520989 | MG520947 | MG520926 |
| Pseudoophiosphaerella huishuiensis | HS13 | MK522499 | MK522505 | MK522509 | MK523389 |
| Pseudophaeosphaeria rubi | MFLUCC 14-0259 | KX765299 | KX765300 | KX765298 | MG520934 |
| Pseudostaurosphaeria chromolaena | MFLUCC 17-1490 | MN994570 | MN994616 | MN994593 | MN998174 |
| P. chromolaenicola | MFLUCC 17-1491 | MN994571 | MN994617 | MN994594 | MN998175 |
| Poaceicola arundinis | MFLU 16-0158 | MG829057 | MG829162 | MG828947 | MG829229 |
| P. bromi | MFLUCC 13-0739 | KU058727 | – | KU058717 | – |
| Sclerostagonospora rosicola | MFLUCC 15-0129 | MG829068 | MG829172 | MG828957 | MG829237 |
| Scolicosporium minkeviciusii | MFLUCC 12-0089 | KF366382 | KF366383 | – | – |
| Septoriella phragmitis | CPC 24118 | KR873279 | – | KR873251 | – |
| S. pseudophragmitis | CBS 145417 | – | – | MK560161 | MK559452 |
| Setomelanomma holmii | CBS 110217 | GU301871 | GU296196 | KT389542 | GU349028 |
| Setophoma antiqua | LC6594 | MK511947 | – | MK511909 | MK525070 |
| S. chromolaenae | CBS 135105 | KF251747 | – | KF251244 | KF253195 |
| S. endophytica | LC3163 | MK511956 | – | MK511931 | MK525092 |
| S. longinqua | LC6593 | MK511946 | – | MK511908 | MK525069 |
| S. pseudosacchari | CBS 145373 | MK540039 | – | MK539969 | |
| S. sacchari | MFLUCC 11-0154 | KJ476146 | KJ476148 | KJ476144 | KJ461319 |
| MFLUCC 12-0241 | KJ476147 | KJ476149 | KJ476145 | KJ461318 | |
| S. terrestris | CBS 335.29 | KF251749 | GQ387526 | KF251246 | KF253196 |
| S. vernoniae | CBS 137988 | KJ869198 | – | KJ869141 | MK540162 |
| S. yingyisheniae | LC12696 | MK511950 | – | MK511914 | MK525075 |
| S. yunnanensis | LC6532 | MK511945 | – | MK511907 | MK525068 |
| Stagonospora foliicola | CBS 110111 | KF251759 | EU754118 | KF251256 | KF253206 |
| Sulcispora sp. | MFLUCC 14-0995 | KP271444 | KP271445 | KP271443 | MH665366 |
| Sulcispora pleurospora | CBS 460.84 | – | – | AF439498 | – |
| Tintelnotia destructans | CBS 127737 | KY090664 | KY090698 | KY090652 | – |
| T. opuntiae | CBS 376.91 | GU238123 | GU238226 | KY090651 | – |
| Vagicola vagans | CBS 604.86 | KU058727 | – | KF251193 | KF253149 |
| Vittaliana mangrovei | NFCCI 4251 | MG767312 | MG767313 | MG767311 | MG767314 |
| Vrystaatia aloeicola | CBS 135107 | KF251781 | – | KF251278 | – |
| Wingfieldomyces cyperi | CBS 141450 | KX228337 | – | KX228286 | MK540163 |
| Wojnowiciella eucalypti | CPC 25024 | KR476774 | – | KR476741 | LT990617 |
| W. kunmingensis | KUMCC 18-0159 | MK356354 | MK356368 | MK356380 | MK359071 |
| Xenophoma puncteliae | CBS 128022 | JQ238619 | – | – | KP170686 |
| Xenoseptoria neosaccardoi | CBS 120.43 | KF251783 | – | KF251280 | KF253227 |
| CBS 128665 | KF251784 | – | KF251281 | KF253228 | |
| Yunnanensis chromolaenae | MFLUCC 17-1486 | MN994573 | MN994619 | MN994596 | MN998177 |
| MFLUCC 17-1487 | MN994574 | MN994620 | MN994597 | MN998178 | |
| Yunnanensis phragmitis | MFLUCC 17-0315 | MF684863 | MF684867 | MF684862 | MF683624 |
| MFLUCC 17-1361 | MF684865 | MF684864 | MF684869 | – | |