Table 4.
Three-dimensional structures of SVMPs available in the Protein Data Bank (PDB).
| Protein (PDB) | Snake Species | Class SVMP | Method | References |
|---|---|---|---|---|
| Acutolysin A (1BUD) | Deinagkistrodon acutus | P-I | X-ray | Gong et al. (1998) |
| Acutolysin-C (1QUA) | Deinagkistrodon acutus | P-I | X-ray | Zhu et al. (1999) |
| FII (1YP1) | Deinagkistrodon acutus | P-I | X-ray | Lou et al. (2005) |
| AaHIV (3HDB) | Deinagkistrodon acutus | P-III | X-ray | Zhu et al. (2009) |
| Disintegrin (2M75) | Calloselasma rhodostoma | P-IIa (D-domain) | NMR | Chuang et al. (2013) |
| Rhodostomin (Rho) (2M7F, 2M7H, 4R5R, 3UCI, 4RQG, 4M4C, 4R5U, 14Y, 1Q7I, 1Q7J, 2LJV, 2M75, 2PJF, 2PJI) | Calloselasma rhodostoma | P-II (recombinant D-domain with and without mutations) | NMR and X-ray | Chen et al., 2009, Huang et al., 2015, Shiu et al., 2015 |
| Atragin (3K7L) | Naja atra | P-III | X-ray | Guan et al. (2010) |
| K-like protein (3K7N) | Naja atra | P-III | X-ray | Guan et al. (2010) |
| Leucurolysin-A (4Q1L) | Bothrops leucurus | P-I | X-ray | Ferreira et al. (2015) |
| TM-1 (4J4M) | Protobothrops mucrosquamatus | P-I | X-ray | Chou et al. (2013) |
| BmooMPalpha-I (3GBO) | Bothrops moojeni | P-I | X-ray | Akao et al. (2010) |
| TM-3 complexed with pEKW (1KUK) | Protobothrops mucrosquamatus | P-I | X-ray | Huang et al. (2002) |
| TM-3 (1KUF) | Protobothrops mucrosquamatus | P-I | X-ray | Huang et al. (2002) |
| Bothropasin (3DSL) | Bothrops jararaca | P-III | X-ray | Muniz et al. (2008) |
| VAP1 (2ERQ, 2ERP, 2ERO)) | Crotalus atrox | P-III | X-ray | Takeda et al. (2006) |
| VAP2 (2DW0, 2DW1, 2DW2) | Crotalus atrox | P-III | X-ray | Igarashi et al. (2007) |
| Disintegrin (1TEJ) | Echis carinatus | P-IId | X-ray | Bilgrami et al. (2005) |
| Acostatin (3C05) | Agkistrodon contortrix contortrix | P-IIe | X-ray | Moiseeva et al. (2008) |
| Schistatin (1RMR) | Echis carinatus | P-IId | X-ray | Bilgrami et al. (2004) |
| Trimestatin (1JL2) | Protobothrops flavoviridis | P-IIa (D-domain) | X-ray | Fujii et al. (2003) |
| Bitistatin A (2MOP) | Bitis arietans | P-IIa (D-domain) | NMR | Carbajo et al. (2015) |
| Bitistatin B (2MP5) | Bitis arietans | P-IIa (D-domain) | NMR | Carbajo et al. (2015) |
| Salmosin (1L3X) | Gloydius brevicaudus | P-IIa (D-domain) | NMR | Shin et al. (2003) |
| Echistatin (1RO3) | Echis carinatus | P-IIa (D-domain) | NMR | Monleón et al. (2005) |
| Obtustatin (1MPZ) | Macrovipera lebetina obtusa | P-IIa (D-domain) | NMR | Moreno-Murciano et al. (2003) |
| Kistrin (1N4Y) | Calloselasma rhodostoma | P-IIa (D-domain) | NMR | Adler et al. (1991) |
| Jerdostatin (2W9V, 2W9O, 2W9U, 2W9W) | Protobothrops jerdonii | P-IIa (recombinant D-domain) | NMR | Carbajo et al. (2011) |
| RVV-X (2E3X) | Daboia siamensis | P-III | X-ray | Takeda et al. (2007) |
| Atrolysin-C (1HTD/1ATL) | Crotalus atrox | P-I | X-ray | Zhang et al. (1994) |
| BaP1 (1ND1) | Bothrops asper | P-I | X-ray | Watanabe et al. (2009) |
| BaP1 complexed with a peptidomimetic (2W14) | Bothrops asper | P-I | X-ray | Lingott et al. (2009) |
| Adamalysin II (1IAG) | Crotalus adamanteus | P-I | X-ray | Gomis-Rüth et al. (1993) |
| Flavoridin (1FVL) | Protobothrops flavoviridis | P-IIa (D-domain) | NMR | Senn and Klaus (1993) |
| H2-proteinase (1WN1) | Protobothrops flavoviridis | P-I | X-ray | Kumasaka et al. (1996) |
| Disintegrin (1Z1X) | Echis carinatus | P-IIa (D-domain) | X-ray | Hassan et al. (2005) |