Table 3.

Primers and probes used in digital droplet PCR [20,35,36].

Target	Primers and Probe	Sequences 5′-3′	Reference
F. prausnitzii	Fpra_428_F	TGTAAACTCCTGTTGTTGAGGAAGATAA	[20]
	Fpra_583_R	GCGCTCCCTTTACACCCA
	Fpra_493_PR	FAM/CAAGGAAGTGACGGCTAACTACGTGCCAG/IABkFQ
E. coli	Ecoli_395_F	CATGCCGCGTGTATGAAGAA	[35]
	Ecoli_490_R	CGGGTAACGTCAATGAGCAAA
	Ecoli_437_PR	FAM/TATTAACTTTACTCCCTTCCTCCCCGCTGAA/IABkFQ
C. coccoides	F_Ccoc_07	GACGCCGCGTGAAGGA	[36]
	R_Ccoc_14	AGCCCCAGCCTTTCACAT
	P_Erec_482	VIC/CGGTACCTGACTAAGAAG/IABkFQ
Bacteria	F_Bact_1369	CGGTGAATACGTTCCCGG	[36]
	R_Prok_1492	TACGGCTACCTTGTTACGACTT
	P_TM_1389F	FAM/CTTGTACACACCGCCCGTC/IABkFQ