Table 1.
Typing Scheme | Schema Diversity | Number of Groups Generated | |||||
---|---|---|---|---|---|---|---|
Number of Groups Identified * | Simpson’s D.I. | Beef | Chicken | Dairy | Human | Swine | |
MLST | 174 | 0.963 | 33 | 54 | 34 | 64 | 16 |
cgMLST200 | 197 | 0.964 | 38 | 102 | 40 | 87 | 18 |
cgMLST100 | 298 | 0.983 | 73 | 131 | 68 | 103 | 22 |
cgMLST50 | 422 | 0.991 | 115 | 150 | 107 | 122 | 22 |
cgMLST25 | 543 | 0.997 | 149 | 168 | 141 | 145 | 23 |
cgMLST10 | 652 | 0.999 | 175 | 187 | 162 | 156 | 23 |
cgMLST5 | 734 | 0.999 | 196 | 196 | 173 | 175 | 23 |
cgMLST0 | 828 | 1 | 211 | 205 | 180 | 216 | 23 |
* Typing groups may be found in multiple hosts.