Table 3.
Strain ID | MLST | cgMLST200 | cgMLST5 | cgMLST0 | ||||
---|---|---|---|---|---|---|---|---|
Group ID | Source * | Group ID | Source | Group ID | Source | Group ID | Source | |
N46804F | 982 | B,D,H | 28 | B,C,D,H,S | 57 | D,H | 250 | D |
SRR5217159 | 982 | B,D,H | 28 | B,C,D,H,S | 57 | D,H | 754 | H |
N45809F | 982 | B,D,H | 28 | B,C,D,H,S | 209 | D,H | 209 | D |
SRR5878335 | 982 | B,D,H | 28 | B,C,D,H,S | 209 | D,H | 826 | H |
N48272F | 8 | B,C,D,H,S | 12 | B,C,D,H,S | 223 | D,H | 291 | D |
SRR2970498 | 8 | B,C,D,H,S | 12 | B,C,D,H,S | 223 | D,H | 528 | H |
N50152F | 806 | B,D,H,S | 18 | B,D,H,S | 362 | B,H | 362 | B |
SRR5604241 | 806 | B,D,H,S | 18 | B,D,H,S | 362 | B,H | 806 | H |
SRR5152202 | 50 | C,D,H | 100 | C,D,H | 400 | C,H | 719 | C |
SRR1794080 | 50 | C,D,H | 100 | C,D,H | 400 | C,H | 400 | H |
SRR2075414 | 45 | B,C,D,H,S | 407 | C,H | 407 | C,H | 407 | C |
SRR3029056 | 45 | B,C,D,H,S | 407 | C,H | 407 | C,H | 407 | H |
SRR2094236 | 353 | C,D,H | 412 | C,H | 412 | C,H | 412 | C |
SRR2182579 | 353 | C,D,H | 412 | C,H | 412 | C,H | 444 | H |
SRR3092138 | 52 | C,H,S | 510 | C,H,S | 512 | S,H | 822 | S |
SRR5754156 | 52 | C,H,S | 510 | C,H,S | 512 | S,H | 551 | H |
SRR5152177 | 2083 | C,H | 584 | C,H | 593 | C,H | 714 | C |
SRR5932391 | 2083 | C,H | 584 | C,H | 593 | C,H | 833 | H |
* Beef (B), Dairy (D), Human (H), Chicken (C) and Swine (S).