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Nucleotide and haplotype diversity of genomic regions of SARS-CoV-2 used for molecular detection.
| Parameter | E-Gene | N-Gene | RdRp (ORF1ab Polyprotein Region) |
|---|---|---|---|
| Number of sequences | 348 | 327 | 228 |
| Number of sites | 228 | 1260 | 21332 |
| Number of variable sites | 2 | 25 | 131 |
| Number of haplotypes (h) | 3 | 25 | 101 |
| Haplotype diversity (Hd) | 0.023 | 0.573 | 0.9475 |
| Nucleotide diversity (Pi) | 0.00010 | 0.00135 | 0.00015 |
| Theta (per site) from Eta | 0.00136 | 0.00312 | 0.00102 |
