| AD | Alzheimer’s disease |
| ALS | Amyotrophic lateral sclerosis |
| ALXDRD | Alexandria disease |
| APOD | Apolipoprotein D |
| APP | Amyloid precursor protein |
| AT | Ataxia telangiectasia |
| ATM | Ataxia telangiectasia mutated |
| ATXN | Ataxin |
| Aβ | Amyloid beta |
| BBB | Blood–brain barrier |
| C9orf72 | Chromosome 9 open reading frame 72 |
| CNS | Central nervous system |
| CTGF | Connective tissue growth factor |
| dAPPL | dAPP-like |
| Ddysb | Drosophila dysb |
| dJNK | c-Jun N-terminal kinase |
| DPR | Dipeptide repeat |
| DRPLA | Dentatorubral pallidoluysian atrophy |
| DSB | DNA double-strand break |
| DTNBP1 | Dystrobrevin-binding protein 1 |
| Dysbindin | Dysb |
| EA | Episodic ataxia |
| EAAT1 | Excitatory amino acid transporter 1 (also known as GLAST) |
| ER | Endoplasmic reticulum |
| FA(FRDA) | Friedreich ataxia |
| FMRP | FMR1 protein |
| FTD | Frontotemporal dementia |
| FTDALS | Frontotemporal dementia and/or amyotrophic lateral sclerosis |
| FXN | Frataxin |
| FXR | Fragile X syndrome |
| FXTAS | Fragile X tremor/ataxia syndrome |
| GABA | γ-aminobutyric acid |
| GAT | γ-aminobutyric acid (GABA) transporter |
| GFAP | Glial fibrillary acidic protein |
| HD | Huntington’s disease |
| HRE | Hexanucleotide repeat expansion |
| HS | Hemisphere |
| HSP | Heat shock protein |
| HTT | Huntingtin |
| ILS | Insulin-like signaling |
| IT15 | Interesting transcript 15 (also known as huntingtin) |
| LD | Lipid droplets |
| MB | Mushroom bodies |
| MCTs | Monocarboxylate transporters |
| MeCP2 | Methyl-CpG-binding protein 2 |
| mHtt | Mutant Htt protein |
| MJD | Machado–Joseph disease (also known as SCA3) |
| NO | Nitric oxide |
| NSD1 | Nuclear receptor-binding SET domain protein 1 |
| PAPs | Perisynaptic astrocyte processes |
| PNS | Peripheral nervous system |
| polyQ | Polyglutamine |
| RAN | Repeat-associated non-AUG-initiated |
| RETT | RETT syndrome |
| ROS | Reactive oxygen species |
| SAGA | Spt/Ada/Gcn5 acetylase |
| SBMA | X-linked spinobulbar muscular atrophy (also known as Kennedy disease) |
| SCA | Spinocerebellar ataxias |
| SCZD | Schizophrenia |
| SN | Segmentally organized nerve |
| OD1 | Cu/Zn superoxide dismutase 1 |
| SOTOS1 | Sotos syndrome 1 |
| SPG | Sub-perineurial glia |
| TARDBP | TAR DNA-binding protein |
| TBPH | TAR DNA-binding protein-43 homolog protein |
| UTR | Untranslated region |
| VNC | Ventral nerve cord |