Table 5.
(A) Gene ontology (GO) biologic process (20 most dysregulated GO-term); (B) KEGG pathways and (C) reactome pathways of the 18 common dysregulated genes (analyzed by String 11.1 Database).
(A) GO-term | Description | Count in Gene Set | False Discovery Rate |
GO:0071346 | cellular response to interferon-gamma | 2 of 39 | 0.0265 |
GO:0070098 | chemokine-mediated signaling pathway | 2 of 30 | 0.0265 |
GO:0050921 | positive regulation of chemotaxis | 2 of 68 | 0.0265 |
GO:0048522 | positive regulation of cellular process | 7 of 2201 | 0.0265 |
GO:0048247 | lymphocyte chemotaxis | 2 of 20 | 0.0265 |
GO:0045087 | innate immune response | 3 of 217 | 0.0265 |
GO:0044089 | positive regulation of cellular component biogenesis | 3 of 220 | 0.0265 |
GO:0040011 | locomotion | 4 of 404 | 0.0265 |
GO:0030593 | neutrophil chemotaxis | 2 of 23 | 0.0265 |
GO:0016477 | cell migration | 3 of 293 | 0.0265 |
GO:0010469 | regulation of signaling receptor activity | 4 of 325 | 0.0265 |
GO:0009967 | positive regulation of signal transduction | 4 of 638 | 0.0265 |
GO:0006955 | immune response | 4 of 386 | 0.0265 |
GO:0006954 | inflammatory response | 3 of 250 | 0.0265 |
GO:0006935 | chemotaxis | 3 of 172 | 0.0265 |
GO:0006928 | movement of cell or subcellular component | 4 of 486 | 0.0265 |
GO:0002687 | positive regulation of leukocyte migration | 2 of 63 | 0.0265 |
GO:0002548 | monocyte chemotaxis | 2 of 12 | 0.0265 |
GO:0071347 | cellular response to interleukin-1 | 2 of 75 | 0.0267 |
GO:0051173 | positive regulation of nitrogen compound metabolic process | 5 of 1184 | 0.0267 |
(B) KEGG Pathways | Pathway Description | Count in Gene Set | False Discovery Rate |
rno04060 | Cytokine–cytokine receptor interaction | 3 of 217 | 0.0130 |
(C) Reactome Pathways | Pathway Description | Count in Gene Set | False Discovery Rate |
RNO-68877 | Mitotic prometaphase | 4 of 168 | 0.00063 |
RNO-5663220 | RHO GTPases activate formins | 3 of 116 | 0.0013 |
RNO-2500257 | Resolution of sister chromatid cohesion | 3 of 100 | 0.0013 |
RNO-141444 | Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal | 3 of 80 | 0.0013 |
RNO-2467813 | Separation of sister chromatids | 3 of 149 | 0.0019 |