Box 5 Table |.

Callers specialized in resolving complexity

Method	Detection	URL	Ref
Sniffles	Complex SVs	https://github.com/fritzsedlazeck/Sniffles	96
CORGi	Complex SVs	https://github.com/zstephens/CORGi	98
HySA	Complex SVs	https://bitbucket.org/xianfan/hybridassemblysv	132
GROC-SVs	Complex SVs	https://github.com/grocsvs/grocsvs	69
TSD	Complex SVs	https://github.com/menggf/tsd	152
local-rearrangements	Complex SVs	https://github.com/mcfrith/local-rearrangements	209
gemtools	Complex SVs, SV phasing	https://github.com/sgreer77/gemtools	182
SDA	Segmental duplications	https://github.com/mvollger/SDA	203
rMETL	Mobile element insertions	https://github.com/hitbc/rMETL	210
adVNTR	Variable number tandem repeats	https://github.com/mehrdadbakhtiari/adVNTR	205
PacmonsTR	Tandem repeats	https://github.com/alibashir/pacmonstr	206
RepeatHMM	Microsatellites	https://github.com/WGLab/RepeatHMM	207
nplvn	NAHR-mediated inversions	https://github.com/haojingshao/npInv	204
VALOR2	Segmental duplications	https://github.com/BilkentCompGen/valor	72
PALMER	Mobile element insertions	https://github.com/mills-lab/PALMER	n/a