TABLE 4.
Interspersed repeats annotated in P. medius genome sequence using RepeatMasker.
| Class* | Sub-class | Count | Cumulative size (bp) | Percentage in the genome (%) |
| DNA | – | 1,010 | 191,112 | 0.01 |
| PiggyBac | 1,954 | 721,278 | 0.04 | |
| TcMar-Mariner | 648 | 125,351 | 0.01 | |
| TcMar-Tc2 | 1,737 | 618,278 | 0.03 | |
| TcMar-Tigger | 32,925 | 11,660,016 | 0.59 | |
| hAT | 824 | 208,125 | 0.01 | |
| hAT-Ac | 478 | 217,854 | 0.01 | |
| hAT-Blackjack | 3,968 | 1,037,449 | 0.05 | |
| hAT-Charlie | 72,918 | 17,479,065 | 0.89 | |
| hAT-Tag1 | 403 | 144,892 | 0.01 | |
| hAT-Tip100 | 12,415 | 4,240,959 | 0.22 | |
| LINE | CR1 | 3,663 | 1,159,469 | 0.06 |
| L1 | 399,046 | 293,952,163 | 14.97 | |
| L2 | 53,043 | 19,005,727 | 0.97 | |
| RTE-BovB | 1,110 | 618,176 | 0.03 | |
| RTE-X | 1,646 | 676,407 | 0.03 | |
| LTR | – | 1,631 | 574,128 | 0.03 |
| ERV1 | 44,596 | 23,334,633 | 1.19 | |
| ERVK | 5,915 | 1,601,327 | 0.08 | |
| ERVL | 41,775 | 22,884,779 | 1.17 | |
| ERVL-MaLR | 75,722 | 27,922,114 | 1.42 | |
| Gypsy | 1,965 | 693,212 | 0.04 | |
| RC | Helitron | 332 | 113,660 | 0.01 |
| SINE | 5S | 11,447 | 2,005,503 | 0.10 |
| MIR | 67,536 | 9,536,267 | 0.49 | |
| tRNA | 1,887 | 252,641 | 0.01 | |
| tRNA-5S | 2,413 | 393,491 | 0.02 | |
| Unknown | – | 639 | 130,749 | 0.01 |
| Total | Interspersed | 844,981 | 441,707,409 | 22.50 |
*Results from RepeatMasker are summarized by repeat class and the repeat class below 0.01% is masked but was taken into account for the total counts.