Table IV.
The top 5 up- and downregulated circRNAs in patients with gastric cancer.
| CircRNAID | Regulation | logFC | logCPM | P-value | circBaseID | Source | Best_transcript | Gene name | Cataloga | Length |
|---|---|---|---|---|---|---|---|---|---|---|
| chr10:27356086-27368090– | Up | 8.3486443 | 8.161152 | 5.099E-06 | hsa_circ_0093425 | circBase | NM_014915 | ANKRD26 | Exonic | 467 |
| chr2:153535866-153537850– | Up | 8.2675039 | 8.0871901 | 7.155E-06 | Novelb | NM_017892 | PRPF40A | Exonic | 232 | |
| chr1:235582788-235594119+ | Up | 8.2199474 | 8.043562 | 8.684E-06 | hsa_circ_0007247 | circBase | NM_003193 | TBCE | Exonic | 289 |
| chr9:72895675-72901187+ | Up | 8.0946435 | 7.9307965 | 1.425E-05 | Novelb | NM_015110 | SMC5 | Exonic | 375 | |
| chr13:25839957-25848325– | Up | 7.6344005 | 7.5242861 | 7.897E-05 | hsa_circ_0029780 | circBase | NM_004685 | MTMR6 | Exonic | 567 |
| chr6:106649847-106665476– | Down | −7.232753 | 7.1855505 | 0.0004927 | Novelb | NM_004849 | ATG5 | Sense overlapping | 15630 | |
| chrX:17040246-17047746+ | Down | −6.970749 | 6.9710703 | 0.0011441 | hsa_circ_0139983 | circBase | NM_004726 | REPS2 | Exonic | 374 |
| chr13:36886282-36886614– | Down | −6.952648 | 6.9556143 | 0.0011978 | hsa_circ_0001989 | circBase | NM_015087 | SPG20 | Exonic | 250 |
| chr1:28337458-28343750– | Down | −6.934458 | 6.9415945 | 0.0012714 | hsa_circ_0011115 | circBase | NM_001990 | EYA3 | Exonic | 410 |
| chr10:103567487-103567658– | Down | −6.923018 | 6.932443 | 0.001315 | hsa_circ_0019618 | circBase | NM_012215 | MGEA5 | Exonic | 172 |
a
According to their association with protein-coding genes, the circRNAs were classified into five categories: Exonic, intronic, intergenic, antisense, and sense overlapping.
b
Novel, the circRNA has not been included in any circRNA database like circBase. FC, fold change; CPM, count per million.