TABLE 1.
UL11 concn (mg/ml) |
Reference set or parametera |
NRMSDb | % of residuesc
|
|||||
---|---|---|---|---|---|---|---|---|
Helix1 | Helix2 | Strand1 | Strand2 | Turns | Unordered | |||
0.46 | SP175 | 0.043 | 0.08 | 0.12 | 0.12 | 0.11 | 0.17 | 0.4 |
Set 6 | 0.056 | 0.03 | 0.04 | 0.21 | 0.09 | 0.17 | 0.46 | |
Set 7 | 0.041 | 0.06 | 0.1 | 0.19 | 0.09 | 0.21 | 0.35 | |
Avg | 0.06 | 0.09 | 0.17 | 0.10 | 0.18 | 0.40 | ||
0.23 | SP175 | 0.034 | 0.01 | 0.07 | 0.17 | 0.13 | 0.16 | 0.46 |
Set 6 | 0.023 | 0.04 | 0.03 | 0.13 | 0.08 | 0.13 | 0.59 | |
Set 7 | 0.024 | 0.02 | 0.04 | 0.12 | 0.07 | 0.14 | 0.58 | |
Avg | 0.02 | 0.05 | 0.14 | 0.09 | 0.14 | 0.54 | ||
0.13 | SP175 | 0.019 | 0.02 | 0.06 | 0.15 | 0.12 | 0.17 | 0.49 |
Set 6 | 0.022 | 0.02 | 0.04 | 0.11 | 0.07 | 0.12 | 0.64 | |
Set 7 | 0.023 | 0.02 | 0.04 | 0.07 | 0.05 | 0.1 | 0.72 | |
Avg | 0.02 | 0.05 | 0.11 | 0.08 | 0.13 | 0.62 |
The reference set is the set of curves used in CDSSTR (53) to estimate secondary structure content from experimental curves.
NRMSD, normalized root mean square deviation between calculated and experimental CD spectra.
The percentage of residues in a regular helix (93) (Helix1), distorted helix (Helix2), regular strand (Strand1), distorted strand (Strand2), and beta turns (Turns) and the percentage of residues lacking secondary structure (Helix1, Helix2, Strand1, Strand2, and Turns) (Unordered).