Table 1.
Gene expression omnibus (GEO) repository datasets of miRNA cancer studies used in the project for platforms GPL8786, GPL14613 and GPL16384. BRCA: breast cancer; ESCA: esophageal cancer; HSNC: head and neck squamous cell cancer; LIHC: liver hepatocellular cancer; PRCA: prostate cancer; GBM: gliobastoma; CRC: colorectal cancer; NSCLC: non-small-cell lung cancer; GC: gastric cancer; OVC: ovarian cancer.
| Dataset | Samples | Type | Reference | Class | Platform |
|---|---|---|---|---|---|
| GSE48088 | 33 | BRCA | [34] | 0 | GPL14613 |
| GSE86277 | 72 | BRCA | [35] | 0 | GPL14613 |
| GSE86278 | 49 | BRCA | [35] | 0 | GPL14613 |
| GSE86281 | 50 | BRCA | [35] | 0 | GPL16384 |
| GSE55856 | 108 | ESCA | [36] | 1 | GPL14613 |
| GSE34496 | 44 | HSNC | - | 2 | GPL8786 |
| GSE67138 | 57 | LIHC | - | 3 | GPL8786 |
| GSE67139 | 115 | LIHC | - | 3 | GPL8786 |
| GSE116182 | 64 | LIHC | - | 3 | GPL14613 |
| GSE36802 | 21 | PRCA | [37] | 4 | GPL8786 |
| GSE45604 | 50 | PRCA | [38] | 4 | GPL14613 |
| GSE104554 | 38 | GBM | [39] | 5 | GPL14613 |
| GSE110402 | 75 | CRC | [40] | 6 | GPL14613 |
| GSE46729 | 24 | NSCLC | - | 7 | GPL8786 |
| GSE63121 | 15 | GC | [41] | 8 | GPL8786 |
| GSE47841 | 30 | OVC | [42] | 9 | GPL14613 |