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. 2019 Nov 12;4(6):e00511-19. doi: 10.1128/mSystems.00511-19

TABLE 2.

Permutational multivariate analysis of variance of host variables based on unweighted and weighted UniFrac distance metrics

Site Formula Variable Unweighted UniFrac
Weighted UniFrac
Sum
sqrs
R2 F Pr(>F) Sum
sqrs
R2 F Pr(>F)
Gut 1a Host species 10.03 0.12 2.07 0.001 4.12 0.16 2.90 0.001
Locality 7.35 0.09 2.43 0.001 1.9 0.07 2.14 0.001
2b Diet 2.14 0.03 8.93 0.001 1.12 0.04 15.28 0.001
3c Mass 1.78 0.02 7.43 0.003 0.96 0.04 13.08 0.003
Age 0.75 0.01 1.57 0.011 0.27 0.01 1.82 0.06
Sex 0.46 0.01 1.92 0.009 0.04 <0.01 0.58 0.86
Oral 1 Host species 12.14 0.13 2.17 0.001 4.21 0.29 6.80 0.001
Locality 7.62 0.08 2.62 0.001 0.7 0.05 2.18 0.001
2 Diet 1.93 0.02 6.81 0.001 2.09 0.14 51.98 0.001
3 Mass 1.71 0.02 6.12 0.002 1.3 0.09 31.73 0.003
Age 1.51 0.02 2.69 0.002 0.25 0.02 3.08 0.006
Sex 0.31 <0.01 1.09 0.293 0.14 0.01 3.38 0.01
Skin 1 Locality 11.3 0.11 3.8 0.001 3.76 0.18 9.41 0.001
Host species 10.1 0.10 1.96 0.001 3.13 0.15 4.53 0.001
2 Diet 5.28 0.05 20.52 0.001 1.14 0.06 21.18 0.001
3 Mass 3.32 0.03 13 0.002 0.75 0.04 14.20 0.002
Age 2.05 0.02 4.02 0.002 0.43 0.02 4.07 0.002
Sex 0.34 <0.01 1.31 0.148 0.07 <0.01 1.38 0.161
a

Formula 1. adonis2([data] ∼ Locality + Host species, by = “margin,” perm = 999).

b

Formula 2. adonis2([data] ∼ Diet, strata = Locality, perm = 999).

c

Formula 3. adonis2([data] ∼ Age + Sex + Mass, strata = Host species, by = “margin,” perm = 999).