Table 3.
Genes described as related with the multicellular growth of Ustilaginomycetes.
| Gene | Ustilago maydis a | Ustilago hordei a,b | Ustilago bromivora c | Sporisorium reilianum a,b | Sporisorium graminícola a | Testicularia cyperi a,b,d |
|---|---|---|---|---|---|---|
| GCN5—Histone acetyltransferase | UMAG_05168 | UHOR_03120 | UBRO_03120 | sr13072 | EX895_004562 | BCV70DRAFT_198404 |
| Putative histone acetylase | UMAG_10190 | UHOR_03120 | UBRO_03120 | sr13072 | EX895_004562 | BCV70DRAFT_198404 |
| CLR3—Histone deacetylase | UMAG_02102 | UHOR_03487 | UBRO_03487 | sr13325 | EX895_004958 | BCV70DRAFT_166948 |
| HOS2—Histone deacetylase | UMAG_11828 | UHOR_01015 | UBRO_01015 | sr11943 | EX895_000889 | BCV70DRAFT_70918 |
| TEA4—SH3 domain protein | UMAG_01012 | UHOR_01534 | UBRO_01534 | sr12319 | EX895_006176 | BCV70DRAFT_159133 |
| TEA1—Kelch domain protein | UMAG_15019 | UHOR_01124 | UBRO_01124 | sr12022 | EX895_000966 | BCV70DRAFT_69247 |
| REP1—Repellent | UMAG_03924 | UHOR_05948 | UBRO_05948 | sr14829 | EX895_001361 | BCV70DRAFT_80316 |
| REP4—Repellent | UMAG_04517 | UHOR_06499 | UBRO_06499 | sr15402 | EX895_002086 | BCV70DRAFT_202324 |
| HUM2—Hydrophobin 2 | UMAG_11562 | UHOR_07158 | UBRO_07158 | sr15890 | EX895_002555 | BCV70DRAFT_207191 |
| HUM3—Hydrophobin 3 | UMAG_04433 | UHOR_06926 | UBRO_06926 | sr15320 | EX895_002383 | BCV70DRAFT_189664 |
| RRM4—RNA-binding protein | UMAG_03494 | UHOR_05377 | UBRO_05377 | sr14484 | EX895_006466 | BCV70DRAFT_213009 |
| Actin-binding protein | UMAG_05340 | UHOR_08160 | UBRO_08160 | sr16324 | EX895_003081 | BCV70DRAFT_155405 |
| Actin | UMAG_11232 | UHOR_08813 | UBRO_08813 | sr11345 | EX895_003701 | BCV70DRAFT_201455 |
| Actin-interactin gprotein; actin patch component | UMAG_05949 | UHOR_08467 | UBRO_08467 | sr16579 | EX895_005119 | BCV70DRAFT_213703 |
| Actin filament organization | UMAG_04613 | UHOR_06638 | UBRO_06638 | sr15500 | EX895_002183 | BCV70DRAFT_202237 |
| LIS1—Nuclear migration | UMAG_03164 | UHOR_04938 | UBRO_04938 | sr14206 | EX895_005820 | BCV70DRAFT_200264 |
| Actin regulating Ser/Thr kinase | UMAG_03081 | UHOR_04824 | UBRO_04824 | sr14140 | EX895_002483 | - |
| Formin; actin nucleation | UMAG_12254 | UHOR_06202 | UBRO_06202 | sr15020 | EX895_001591 | BCV70DRAFT_205747 |
| Formin; actin nucleation. Functionally redundant with Bni1 | UMAG_01141 | UHOR_01723 | UBRO_01723 | sr12440 | EX895_006065 | BCV70DRAFT_12160 |
| F-actin capping protein alpha subunit | UMAG_00423 | UHOR_00664 | UBRO_00664 | sr11788 | EX895_000652 | BCV70DRAFT_196835 |
| F-actin capping protein beta subunit | UMAG_11177 | UHOR_08001 | UBRO_08001 | sr16266 | EX895_002944 | BCV70DRAFT_201290 |
| Chaperonin role for actin and tubulin | UMAG_01279 | UHOR_01918 | UBRO_01918 | sr10401 | EX895_001741 | BCV70DRAFT_197510 |
| Chaperonin role for actin and tubulin | UMAG_06235 | UHOR_08845 | UBRO_08845 | sr16767 | EX895_003720 | BCV70DRAFT_199599 |
| Chaperonin role for actin and tubulin | UMAG_06067 | UHOR_08612 | UBRO_08612 | sr16694 | EX895_003550 | BCV70DRAFT_202419 |
| Chaperonin role for actin and tubulin | UMAG_02571 | UHOR_04113 | UBRO_04113 | sr17132 | EX895_005225 | BCV70DRAFT_198632 |
| Chaperonin role for actin and tubulin | UMAG_03959 | UHOR_06000 | UBRO_06000 | sr14864 | EX895_001395 | BCV70DRAFT_69984 |
| Chaperonin role for actin and tubulin | UMAG_02350 | UHOR_03838 | UBRO_03838 | sr13553 | EX895_004884 | BCV70DRAFT_198957 |
| Chaperonin role for actin and tubulin | UMAG_00565 | UHOR_00911 | UBRO_00911 | sr11843 | EX895_000809 | BCV70DRAFT_73687 |
| Chaperonin role for actin and tubulin | UMAG_04401 | UHOR_06879 | UBRO_06879 | sr15289 | EX895_002355 | BCV70DRAFT_200184 |
| Actin binding and severing protein | UMAG_04314 | UHOR_06753 | UBRO_06753 | sr15202 | EX895_002269 | BCV70DRAFT_211263 |
| Cortical actin cytoskeleton component | UMAG_04417 | UHOR_06902 | UBRO_06902 | sr15303 | EX895_002369 | BCV70DRAFT_200171 |
| Kinesin—Related to UMAG_ Kin14 | UMAG_11986 | UHOR_06484 | UBRO_06484 | sr15392 | EX895_002076 | BCV70DRAFT_202332 |
| Kinesin—Functionally redundant with Cin8 | UMAG_10678 | UHOR_07574 | UBRO_07574 | sr15603 | EX895_000239 | BCV70DRAFT_203263 |
| Kinesin—Related motor protein (UMAG_ Kin7a and Kin7b) | UMAG_00896 | UHOR_01350 | UBRO_01350 | sr12193 | EX895_006269 | BCV70DRAFT_199338 |
| Kinesin—related motor protein / Related to UMAG_ Kin8 | UMAG_01560 | UHOR_02319 | UBRO_02319 | sr12632 | EX895_004356 | BCV70DRAFT_199992 |
| Interacts with Myo2—related to motor domain of kinesins | UMAG_04218 | UHOR_06328 | UBRO_06328 | sr15103 | EX895_001669 | - |
| Type V myosin | UMAG_04555 | UHOR_06551 | UBRO_06551 | sr15438 | EX895_002121 | BCV70DRAFT_40829 |
| MEP1—Low affinity ammonium transporter | UMAG_04523 | UHOR_06506 | UBRO_06506 | sr15408 | EX895_002092 | BCV70DRAFT_208136 |
| MEP2—High affinity ammonium transporter | UMAG_05889 | UHOR_08388 | UBRO_08388 | sr16507 | EX895_003276 | BCV70DRAFT_199125 |
| Putative arginase—Homology with G6606 of U. esculenta | UMAG_04939 | UHOR_07065 | UBRO_07065 | sr15821 | EX895_005725 | BCV70DRAFT_178133 |
| Homology with SSAGC1 (SPSC_00276) of S. scitamineum) | UMAG_11677 | UHOR_02215 | UBRO_02215 | sr12574 | EX895_004280 | BCV70DRAFT_160776 |
| CDC24—Cell division control protein | UMAG_02422 | UHOR_03963 | UBRO_03963 | sr10836 | EX895_004832 | BCV70DRAFT_192816 |
| CLA4—Serine/threonine-protein kinase | UMAG_10145 | UHOR_03893 | UBRO_03893 | sr10814.2 | EX895_004846 | BCV70DRAFT_158032 |
| RHO1—Ras-like GTP-binding protein | UMAG_01032 | UHOR_01559 | UBRO_01559 | sr12336 | EX895_006088 | BCV70DRAFT_166498 |
| RHO1—Ras-like GTP-binding protein | UMAG_05734 | UHOR_12739 | UBRO_07439 | sr16067 | EX895_002745 | CE53947_104590 |
| FUZ1—MYND domain protein | UMAG_02587 | UHOR_04136 | UBRO_04136 | sr13628 | EX895_005246 | BCV70DRAFT_63386 |
Genes mostly analyzed by its deletion. ID genes according to NCBI (a), ExPASy (b), e!EnsemblFungi (c), and JGI MycoCosm (d), and considering the genomic data published for U. maydis [66], U. hordei [67], U. bromivora [68], S. reilianum [69], S. graminícola [70], and T. cyperi [71]; the six Ustilaginomycetes with the best-annotated genomes. Genes identified based on their homology with U. maydis. The analyzed sequences were deposited in https://github.com/lucilaortiz/Multicellularity_associated_proteins.