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. Author manuscript; available in PMC: 2021 May 6.
Published in final edited form as: J Am Chem Soc. 2020 Apr 21;142(18):8142–8146. doi: 10.1021/jacs.0c01861

Mimicking the Constrained Geometry of a Nitrogen-Fixation Intermediate

Tianchang Liu 1, Michael R Gau 1, Neil C Tomson 1,*
PMCID: PMC7409876  NIHMSID: NIHMS1611921  PMID: 32203663

Abstract

Both biological and industrial nitrogen reduction catalysts activate N2 at multinuclear binding sites with constrained Fe–Fe distances. This contrasts with molecular diiron systems, which routinely form linear N2 bridges to minimize steric interactions. Model compounds that capture the salient geometric features of N2 binding by the nitrogenase enzymes and Mittasch catalysts would contribute to understanding their high N2-reduction activity. It is shown in the present study that use of a geometrically flexible, dinucleating macrocycle allows for the formation of a bridging N2 ligand with an unusual Fe–CtN2–Fe angle of 150° (CtN2 = centroid of N2), a geometry that approximates the α-N2 binding mode on Fe(111) surfaces that precedes N2 bond cleavage. The cavity size the macrocycle prevents the formation of a linear Fe–N2–Fe unit and leads to orbital interactions that are distinct from those available to the linear configuration.


Ammonia (NH3) is produced annually on a ~180 megaton scale, largely to provide fixed nitrogen for plants.1 The generally accepted mechanism by which industrial NH3-synthesis catalysts bind and activate N2 invokes multinuclear Fe sites, and recent advances in the understanding of biological N2 fixation points to a similar need for multiple Fe centers at the site of N2 binding. As such, the coordination chemistry of N2 continues to be an area of interest as chemists attempt to adapt the superior performance of these ammonia synthesis catalysts into molecular systems.

Both biological and industrial catalysts constrain the geometries of their multinuclear, N2-binding sites. Biological nitrogen fixation occurs at Fe7MS9C cofactors (M = Mo, V, Fe), found within the active sites of the nitrogenase enzymes.24 While many potential sites of N2 binding in these cofactors have been proposed,57 recent work has focused on a “belt” position that spans two, low-coordinate Fe ions (dFe–Fe = ca. 2.6 Å, Figure 1).89,1011 Industrial ammonia synthesis is also understood to use specific multi-iron centers to activate N2.1213 The catalysts used in the Haber-Bosch process are typically based on metallic iron with main group promotors, the most active face of which is Fe(111).1415 Following initial physisorption through end-on N2-binding (γ-N2, Figure 1), the adsorbate moves into a bridging, side-on binding mode (α-N2) prior to N–N bond cleavage.1621 This binding mode (and the proposed α’-N2 structure that follows15,18) is thought to be critical to N–N bond activation.

Figure 1.

Figure 1.

Top: Proposed location of N2 activation at the FeV cofactors. Bottom: Side- and top-views of the binding modes that precede rate-limiting formation of μ-nitrides on Fe(111) surfaces. The top-, second-, and third-layers of Fe are depicted with orange, dark grey, and light grey spheres, respectively.

The geometry of the α-N2 intermediate appears to be impacted by the constrained Fe–Fe distance of ca. 4.1 Å for top-layer Fe atoms, which leads to an estimate Fe–CtN2–Fe angle to ca. 130°. This contrasts with the vast majority of known molecular systems,22 which form linear Fe–CtN2–Fe bridges to minimize steric repulsion. The development of molecular systems that can offer constrained, multiiron sites for N2 binding is thus of interest for its potential to inform our understanding of industrial (and biological) N2 fixation.

In this Communication, we describe the synthesis, characterization, and electronic structure of unique diiron-μ-N2 complexes. The use of a dinucleating macrocycle constrains the geometry of the Fe–N2–Fe unit, leading to orbital interactions that are unavailable to traditional, linear Fe2(μ-N2) complexes but are of interest for their potential to contribute to multinuclear N2 bond cleavage. We use the 3PDI2 macrocycle, which contains two pyridyldiimine groups connected by propylene linkers (Figure 2). This ligand was recently shown to stabilize a range of bimetallic systems with different core oxidation states and geometries.2325 This work involved the Fe–Fe bonded complexes illustrated at the top-left of Figure 2, [(3PDI2)Fe2(μ-Cl)(PR3)2][OTf] (R[Fe2Cl]+, R = Me, Ph), which provided a starting point for the present study.

Figure 2.

Figure 2.

Top-left: Synthetic scheme for the formation of R[Fe2N2]0. Right: Crystal structure of Ph[Fe2N2]0 and illustration of the acute Fe–CtN2–Fe angle exhibited by this series of complexes. Bottom-left: View along the Fe–Fe vectors for Me[Fe2Cl]+ and Me[Fe2N2]0, highlighting the change in the angle between i) a plane created by the imino nitrogens and the linker-carbons α to the imino nitrogens (N– Cα–Cα–N) and ii) a plane created by the three linker carbons (Cα–Cβ–Cα).

We set out to explore the binding of N2 to reduced forms of the R[Fe2Cl]+ complexes. Chemical reduction with 2.0 equiv of KC8 under an atmosphere of N2 resulted in color changes from dark brown to purplish red. After workup, the products (3PDI2)Fe2(μ-N2)(PR3)2 (R[Fe2N2]0, Figure 2) were isolated in moderate spectroscopic yields (ca. 50–60 %) and low yields on crystallization (11 % for R = Me and 35 % for R = Ph). Crystallographic analysis of both R[Fe2N2]0 complexes revealed μ-N21(N),κ1(N’) units that bridge between the metal centers. The Fe–CtN2–Fe angles of 150.1° (R = Me) and 151.7° (R = Ph) are similar to the cyclic M2Fe3(N2)3 complexes described by Holland (see below) but significantly more acute than known dinuclear Fe2(μ-N2) complexes (Fe–CtN2–Fe > 165°). Three μ-N2 complexes are known that contain (PDI)Fe units; all display linear Fe–CtN2–Fe angles (174.1–177.8°).2627 The N–N distance of 1.135(3) Å in Me[Fe2N2]0 [1.139(4) Å in Ph[Fe2N2]0] shows mild activation compared to free dinitrogen (1.098 Å) and is similar to those observed in related (PDI)Fe–N2 complexes (ca. 1.10–1.13 Å; see Supporting Information).2634

Recent reports in the literature have highlighted the use of ligand design to support multinuclear iron systems that can activate N2. These include Murray’s use of a rigid, trinucleating cyclophane ligand that supports the iron-mediated reduction of N2 into μ-NHx groups (x = 1, 2; Figure 3).35 Use of the same ligand scaffold with Cu led to a Cu3(μ3-N2) species,36 but a corresponding Fe3(N2) species has yet to be detected. Holland and co-workers reported the first example of Fe-mediated N2 cleavage into nitrides (Figure 3).37 Extensive computational investigations identified a candidate for N2 activation that was proposed to bind N2 in a geometry that involves both end-on and side-on coordination modes.38 In related chemistry, Holland described the cyclic M2Fe3(N2)3-containing complexes (Figure 3; M = K, Rb, Cs),39 which form bridging N2 geometries that had only previously been found with a handful of early transition metals.4043 N2 is weakly bound in these examples, and before the present case, it was unclear if the acute Fe–CtN2–Fe angles of ca. 150° can exist in the absence of the stabilizing alkali metal ions. Further, the extent to which this change in geometry impacts the Fe–N2 bonding interaction is currently unknown, prompting us to examine the electronic structures of the R[Fe2N2]0 complexes and the factors that determine their unusual N2-binding geometries.

Figure 3.

Figure 3.

Top-left, Middle: Multinuclear iron systems used for N2 bond cleavage. Top-right: N2-binding by a tricopper cyclophane complex. Bottom: Use of an M2Fe2 unit to bind N2 with an acute Fe–CtN2–Fe angle.

Both compounds were found to be diamagnetic in solution, displaying C2v symmetry, as determined by a characteristic 4:4:2:2 ratio of integrals for the features that result from the diastereotopic methylene groups. The retention of phosphine ligands was apparent from the 31P{1H} NMR spectra, which revealed singlets at 22.33 ppm for R = Me and 60.97 ppm for R = Ph (THF-d8, 298 K). The N2 unit was found to be kinetically inert with respect to dissociation. Either application of a dynamic vacuum or storage of the material under an atmosphere of Ar did not result in detectable decomposition. Both compounds display high N–N stretching frequencies: 2003 cm−1 for Me[Fe2N2]0 and 1959 cm−1 for Ph[Fe2N2]0. The latter shifts to 1896 cm−1 (ΔνNN = 63 cm−1; cf. ΔνNN would be 66 cm−1 assuming a simple oscillator) on use of 15N2 during the synthesis, consistent with our assignment of this feature as resulting from an isolated, diatomic N–N stretching mode. Bridging N2 complexes are typically IR inactive due to the inversion symmetry of linear M–N2–M units. In this case, the out-of-plane positioning of the N2 unit results in significant intensity in the IR spectrum for the N–N stretch. This positioning appears to result from constraints imposed by the macrocyclic ligands in R[Fe2N2]0, which display an expanded, arch-shaped geometry compared to the more contracted ligand geometries in R[Fe2Cl]+. The angle between the planes of the pyridyl rings illustrates the difference between the structures, with ∠py-py = 89.7° for Me[Fe2N2]0 (82.2° for Ph[Fe2N2]0) compared to 21.7° in Me[Fe2Cl]+. The expansion of the macrocycle appears to be limited, however, by torsion within the aliphatic linker (Figure 2). Further unfurling of the macrocycle would force the central methylene into the pocket between the iron centers.

We recently adapted the Δ parameter, an empirical metric used to describe the physical oxidation states of PDI ligands based on characteristic bond lengths of the ligand backbone,44 into units suitable for 3PDI2.25 The Δ values for R[Fe2N2]0 (0.067 for Ph[Fe2N2]0, 0.060 for Me[Fe2N2]0) lie in a range most closely associated with a (3PDI2)4− electron distribution. Cyclic voltammetry on Ph[Fe2N2]0 revealed oxidations at −1.52 and −1.26 V, which likely correspond to PDI-based oxidations. No reduction features of comparable intensity were observed out to the limits of the electrochemical window for the solvent (THF, see Supporting Information). Together with the diamagnetism of the complex and the apparent equivalence of the coordination spheres about the two metal centers, the Δ values suggest the presence of either two low-spin FeII ions or two intermediate-/high-spin ions that are strongly antiferromagnetically coupled. We can immediately discount the high-spin assignment due to the short Fe–NPDI and Fe–P distances (see Supporting Information). DFT calculations were used for further analysis of the electronic structure.

Optimization of a truncated form of Me[Fe2N2]0 provided excellent agreement with the experimental data (see Supporting Information), including a Fe–CtN2–Fe angle of 149.7°, an N–N bond length of 1.148 Å, and νNN = 2010 cm−1 (ΔνNN = 67 cm−1). The experimental Δ value that led to the (3PDI2)4− oxidation state assignment was also reproduced computationally (Δcalc = 0.064). The R[Fe2N2]0 complexes formally contain d8, Fe0 metal centers, but the low-energy π* manifold of the PDI fragment is well known to accept electron density in lieu of Fe<II oxidation states.28, 31, 45 Consistent with the oxidation state assignments inferred from the crystallographic bond lengths, the metal centers are best described as FeII. The FeII ions further appear to be in low-spin electron configurations. The dπ manifold (xz±xz, yz±yz, xy±xy) was found to be fully occupied, with typical π-backbonding interactions between out-of-phase dπ fragment orbitals combinations (xyxy, yzyz) and the N2 π* manifold. Doing so yields the HOMO-6 [(yzyz) + π*z)] and HOMO-7 [(xyxy) + π*x)] (Figure 4; for a quantitative MO diagram, see Figure S23 in the Supporting Information).

Figure 4.

Figure 4.

Qualitative molecular orbital interaction diagram describing the admixture of the π* system of N2 to the d-manifold within Me[Fe2N2]0.

For mononuclear (PDI)Fe complexes, the presence of two electron’s worth of electron density on the ligand typically results from single occupation of both redox-active orbitals (b1 and a2).25, 45 In the case of R[Fe2N2]0, however, the filled, in-phase (HOMO) and out-of-phase (HOMO-1, Figure 4) combinations [(b1+z2)±(b1+z2)] are primarily responsible for the four electron reduction of 3PDI2.

Interestingly, the (b1+z2) fragment would normally be non-bonding with respect to the N2 π* manifold, but HOMO-1 reveals a bonding interaction between π*z and [(b1+z2)–(b1+z2)]. Thus, it appears that the constrained geometry imposed by the macrocycle allows for an additional interaction between the Fe-d and N2-π* manifolds compared to linear Fe–N2–Fe motifs. The extent of mixing is too low in the present case to result in a significant increase in the degree of N2 activation, but it is noteworthy that this type of interaction repeats in LUMO+4 (Figure 4), which results from mixing of π*z with an out-of-phase combination of x2-y2. Complexes with weaker ligand field donor sets, in conjunction with constrained Fe–CtN2–Fe angles, may be able to take advantage of these orbital interactions for N2 bond cleavage.

The importance of constrained-geometry multinuclear iron sites for N2 binding and activation repeat throughout biological and heterogeneous catalysts, but few molecular systems are available that can mimic these interactions. This report described the dinuclear binding of N2 in a coordination environment reminiscent of the α-N2 binding mode to Fe(111). The use of a macrocycle with flexible alkyl linkers allowed the metal centers to separate in space following reduction of an Fe–Fe bonded starting material, providing a location for N2 binding. However, the limited size of the macrocycle cavity prevented the Fe2N2 unit from adopting a linear linkage, as is common in diiron μ-N2 chemistry. The orbital interactions made possible by this geometry provide an avenue for facilitating N2 reduction, thereby highlighting the manner in which geometric tuning of the active site constitutes an important factor in catalytic ammonia synthesis.

Supplementary Material

Supporting Information

ACKNOWLEDGMENT

We thank the donors of the American Chemical Society Petroleum Research Fund (57346-DNI3), the National Institutes of Health (R35GM128794), and the University of Pennsylvania for support of this research. The NIH supplemental awards 3R01GM118510-03S1 and 3R01GM087605-06S1 as well as the Vagelos Institute for Energy Science and Technology supported the purchase of the NMR instrumentation used in this study.

Funding Sources

No competing financial interests have been declared.

Footnotes

ASSOCIATED CONTENT

Supporting Information

Experimental section, NMR spectra, IR spectra, computational details (PDF), crystallographic data (CIF format). This material is available free of charge via the Internet at http://pubs.acs.org.

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