Table 2. Hominin samples used in this study.
| name | region | source | ID | sex | coverage | age (ky) |
|---|---|---|---|---|---|---|
| Vindija Neanderthal | Europe | Max Planck | Vindija33.19 | F | 30x | 52 |
| Altai Neanderthal | Siberia | Max Planck | Altai | F | 52x | 115 |
| Denisovan | Siberia | Max Planck | Denisova | F | 31x | 72 |
| Papuan | Oceania | SGDP | LP6005441-DNA_B10 | F | 41x | 0 |
| French Basque | Europe | SGDP | LP6005441-DNA_D02 | F | 36x | 0 |
| Khomani San | Africa | SGDP | LP6005677-DNA_D03 | F | 44x | 0 |
| Mandenka | Africa | SGDP | LP6005441-DNA_F07 | F | 37x | 0 |
We downloaded samples generated by investigators at the Max Planck Institute from: http://cdna.eva.mpg.de/neandertal/Vindija/VCF; this directory contains genotype calls for several ancient genomes using a consistent pipeline and genotype caller (snpAD) throughout.
SGDP: Simons Genome Diversity Panel.