Table 5.
Details of wheat candidate genes in QTN regions that have been reported in rice.
Candidate gene ID In wheata |
Region associated | Chr | Gene Position | Homologuein Riceb | Homologue ID in Ricec | Reference | Annotation by Nr database |
---|---|---|---|---|---|---|---|
TraesCS1D02G041200 | q1D-3 | 1D | 20.04 | OsG6PIb | AK068236 | Peng et al., 2014 | Glucose-6-phosphate isomerase |
TraesCS1D02G086700 | q1D-5 | 1D | 71.28 | OsAlaAT | AK102488 | Peng et al., 2014 | Aminotransferase |
TraesCS2D02G290800 | q2D-5 | 2D | 372.92 | OsSBEIIa | AB023498 | Peng et al., 2014 | 1,4-alpha-glucan-branching enzyme |
TraesCS5D02G431100 | q5D-2 | 5D | 488.20 | OsLTPL36 | Os03g0369100 | Wang et al., 2015 | Protease inhibitor/seed storage/lipid transfer protein family protein |
TraesCS7A02G549100 | q7A-8 | 7A | 723.26 | OsSBE1 | AK119436 | Peng et al., 2014 | 1,4-alpha-glucan branching enzyme |
TraesCS7B02G034600 | q7B-1 | 7B | 33.91 | OsPullulanase | AB012915 | Peng et al., 2014 | Debranching enzyme 1 |
TraesCS7D02G436800 | q7D-3 | 7D | 556.12 | OsARF10 | Os06g0685700 | Huang et al., 2016 | Auxin response factor |
TraesCS7D02G535400 | q7D-4 | 7D | 627.32 | OsSBE1 | AK119436 | Peng et al., 2014 | 1,4-alpha-glucan branching enzyme |
aThe candidate gene IDs correspond to the wheat IWGSC refseq v1.1 annotation. bThe reported gene names in rice. cThe homologous gene IDs in rice correspond to the rice IRGSP-1.0.39 annotation and GenBank database.