Figure 2.

Phylogeny and location of all Phytophthora agathidicida samples. The phylogeny was computed using maximum likelihood on concatenated variable single nucleotide polymorphism (SNP) loci from all 12 resequenced P. agathidicida genomes, determined by comparison to the reference NZFS3770 genome. Numbers on the branches are approximate likelihood ratio test (aLRT). Main groupings in the phylogeny, indicated by letters, are reported on the map, which represents the top of the North Island of New Zealand.