Table 1.

List of TULV and PUUV high-throughput sequencing-based genome assemblies analyzed in this study. The number of capture rounds (zero: shotgun; one or two enrichment steps), the sequencing instrument used, number of total sequence reads, unique sequence reads (number of reads after filtering duplicates), mapped virus reads (deduplicated reads post-mapping) and the average genome sequence depth are shown. Shotgun sequence read data are from [26].

	Capture	Sequencer	Total Reads	Unique Reads	Virus Reads	Mean Sequence Depth
Tula virus
T10 MarCzKa04	0	HiSeq	30,240,364	30,239,770	1737	9
T9 MarDGb22	0	HiSeq	43,470,283	43,469,619	1781	8
T18 MarDKbB31	0	HiSeq	92,841,279	92,824,579	26,721	48
T19 MarDPf01	0	HiSeq	65,793,875	65,787,860	12,006	34
T8 MarDRb01	0	HiSeq	57,580,789	57,571,558	16,077	38
T13 MarDHg01	0	MiSeq	11,563,256	11,563,254	1539	30
T3 MarDDh05	0	MiSeq	12,157,472	12,157,461	1712	34
T4 MarCzHo09	0	MiSeq	10,363,464	10,363,453	1850	38
T5 MarCzJe04	0	MiSeq	12,634,308	12,634,294	1974	38
T15 MarDSp01	0	MiSeq	2,286,266	2,286,252	4766	97
T14 MarDOt03	0	MiSeq	11,907,702	2,286,176	4682	91
T17 MarDSq15_1 1	0	HiSeq	53,177,359	53,177,238	583	4
T17 MarDSq15_2 1	1	HiSeq	25,564,658	22,901,877	515,194	6238
T6 MarCzGr07	1	HiSeq	13,928,878	10,770,028	62,939	771
T2/T12 MarDSu08_1 1	1	HiSeq	16,711,898	12,660,735	184,258	2249
T2/T12 MarDSu08_2 1	2	HiSeq	28,180,378	1,069,556	334,893	4068
T2/T12 MarDSu08_3 1	1	MiSeq	1,812,673	1,812,673	19,035	378
T1/T11 MagDEf02_1 1	2	HiSeq	30,333,274	1,168,089	734,578	8780
T1/T11 MagDEf02_2 1	2	HiSeq	31,420,140	1,099,805	436,943	5267
T16 MarCHEl42	2	HiSeq	19,306,058	1,666,013	1,066,770	12,896
Puumala virus
P9 MglDCr02	1	MiSeq	2,914,826	1,779,417	57,070	1692
P11 MglDKe04	1	MiSeq	2,243,640	1,160,159	19,312	413
P12 MglDKe05	1	MiSeq	2,702,868	1,374,479	12,927	247
P7 MglLTU01	1	MiSeq	2,676,336	1,719,083	152,509	3004

¹ Technical replicates.