Table 2.
List of data sets used in the main text and supplementary materials
| ID | Data set | Species | Protocol |
|---|---|---|---|
| 10x | 5KNeuron | Mouse neuron | 10x (v3.1) CR* 3.0.2 |
| 10x | 10KHeart | Mouse heart | 10x (v3) CR 3.0.0 |
| GSE111108 [37] | Tian2018 | Human cell lines | 10x Chromium |
| GSE115189[17] | Freytag2018 | Human PBMC | 10x (v2) |
| 10x | 1KNeuron | Mouse neuron | 10x (v2) CR 2.1.0 |
| SRP073767[3] | Zhengmix4eq | Human PBMC | 10x (v1) CR 1.1.0 |
| SRP073767 | Zhengmix4uneq | Human PBMC | 10x (v1) CR 1.1.0 |
| SRP073767 | Zhengmix8eq | Human PBMC | 10x (v1) CR 1.1.0 |
| SRP073767 | PBMC3k | Human PBMC | 10x (v1) GemCode |
| SRP073767 | PBMC4k | Human PBMC | 10x (v1) Chromium |
| SRP073767 | PBMC68k | Human PBMC | 10x (v1) CR 1.1.0 |
| GSE84133[36] | Baron2016 | Human pancreas | inDrop |
| GSE114724[27] | AziziPatient09Rep1 | Human breast tumor | 10x CR 2.1.1 |
| GSE114724 | AziziPatient09Rep2 | Human breast tumor | 10x CR 2.1.1 |
| GSE114724 | AziziPatient10Rep1 | Human breast tumor | 10x CR 2.1.1 |
| GSE114724 | AziziPatient11Rep1 | Human breast tumor | 10x CR 2.1.1 |
| GSE114724 | AziziPatient11Rep2 | Human breast tumor | 10x CR 2.1.1 |
| SDY998[39] | Zhang2019 | Human joint synovial | CEL-seq2 |
| GSE63473[2] | Macosko2015 | Mouse | Drop-seq |
| GSE77288 [25] | Tung2017 | Human iPSC | HiSeq 2500 |
| Tabula Muris [38] | Tabula Muris | Mouse | 10x (v2) |
CR cell ranger