Table 3.
TrCel7A | convMM | invMM | Kinetic substrate accessibility | Adsorption isotherms | ||||
---|---|---|---|---|---|---|---|---|
convVmax/E0 | convKM | η | invVmax/S0 | invKM | Γattack | Γmax | Kd | |
(s−1) | (g/ L) | (L/g/s) | (μmol/g/s) | (μM) | (μmol/g) | (μmol/g) | (μM) | |
Avicel | ||||||||
WTAo | 0.40 ± 0.01a | 18.1 ± 1.8a | 0.022 | 0.034 ± 0.001 | 2.45 ± 0.18 | 0.08 ± 0.00 | 0.1 ± 0.01 | 0.26 ± 0.06 |
N45QAo | 0.34 ± 0.02 | 11.6 ± 2.5 | 0.030 | 0.048 ± 0a | 2.92 ± 0.04a | 0.14 ± 0.01 | 0.23 ± 0.02a | 0.69 ± 0.21 |
N270QAo | 0.35 ± 0.02 | 11.6 ± 2.4 | 0.030 | 0.031 ± 0.001 | 2.22 ± 0.2 | 0.09 ± 0.01 | 0.13 ± 0.01 | 1 ± 0.28 |
N384QAo | 0.35 ± 0.02 | 10.6 ± 1.5 | 0.033 | 0.037 ± 0.001a | 2.54 ± 0.25a | 0.11 ± 0.01 | 0.10 ± 0.01 | 0.3 ± 0.18 |
ΔN-glycAo | 0.24 ± 0.01a | 6.2 ± 0.8 | 0.040 | 0.048 ± 0.002a | 3.54 ± 0.3a | 0.20 ± 0.01 | 0.27 ± 0.02a | 1.01 ± 0.22a |
WTTr | 0.32 ± 0.01 | 9 ± 1.2 | 0.035 | 0.02 ± 0.001a | 1.16 ± 0.09a | 0.06 ± 0.00 | 0.08 ± 0.01a | 0.27 ± 0.08 |
ΔN-glycTr | 0.32 ± 0.01 | 7.4 ± 0.9 | 0.043 | 0.032 ± 0.001 | 1.71 ± 0.12 | 0.10 ± 0.00 | 0.11 ± 0.01 | 0.4 ± 0.11 |
RAC | ||||||||
WTAo | 0.48 ± 0.02a | 1.3 ± 0.2a | 0.37 | 0.65 ± 0.01 | 0.95 ± 0.06 | 1.4 ± 0.1 | 0.92 ± 0.04a | 0.03 ± 0.01 |
N45QAo | 0.37 ± 0.02 | 0.9 ± 0.1 | 0.41 | 0.74 ± 0.02a | 1.23 ± 0.1a | 2.0 ± 0.1 | 1.79 ± 0.0 a | 0.05 ± 0a |
N270QAo | 0.38 ± 0.02 | 1.1 ± 0.2 | 0.33 | 0.61 ± 0.01 | 1.15 ± 0.08 | 1.6 ± 0.1 | 1.14 ± 0.05a | 0.03 ± 0.01 |
N384QAo | 0.34 ± 0.01a | 0.8 ± 0.1 | 0.43 | 0.62 ± 0.02 | 1.03 ± 0.08 | 1.8 ± 0.1 | 1.2 ± 0.08a | 0.02 ± 0.01 |
ΔN-glycAo | 0.30 ± 0.01a | 0.5 ± 0.0a | 0.40 | 0.68 ± 0.01a | 0.82 ± 0.05 | 2.9 ± 0.1 | 1.58 ± 0.04 | 0.11 ± 0.01a |
WTTr | 0.47 ± 0.01a | 1 ± 0.1 | 0.45 | 0.46 ± 0.01a | 0.94 ± 0.09 | 1.0 ± 0.0 | 1.83 ± 0.18a | 0.01 ± 0.01a |
ΔN-glycTr | 0.47 ± 0.01a | 0.8 ± 0.1 | 0.58 | 0.59 ± 0.02 | 0.93 ± 0.1 | 1.3 ± 0.0 | 1.59 ± 0.16 | 0.03 ± 0.01 |
BMCC | ||||||||
WTAo | 1.46 ± 0.14a | 2.1 ± 0.4a | 0.71 | 0.45 ± 0.02a | 1.59 ± 0.15a | 0.31 ± 0.03 | 1.17 ± 0.12 | 1.28 ± 0.29 |
N45QAo | 1.33 ± 0.09a | 1.7 ± 0.2a | 0.77 | 0.52 ± 0.02a | 1.23 ± 0.11 | 0.39 ± 0.03 | 1.96 ± 0.35a | 1.2 ± 0.44 |
N270QAo | 1.13 ± 0.06a | 1.1 ± 0.1 | 1.01 | 0.44 ± 0.02 | 1.49 ± 0.14a | 0.39 ± 0.03 | 0.93 ± 0.15a | 0.99 ± 0.38 |
N384QAo | 1.01 ± 0.03 | 1 ± 0.1 | 1.02 | 0.38 ± 0.02 | 1.29 ± 0.15 | 0.38 ± 0.02 | 1.06 ± 0.04 | 0.85 ± 0.08 |
ΔN-glycAo | 0.96 ± 0.09 | 1.6 ± 0.3a | 0.59 | 0.48 ± 0.01a | 1.38 ± 0.1a | 0.50 ± 0.05 | 1.2 ± 0.06 | 0.62 ± 0.09 |
WTTr | 0.63 ± 0.03a | 0.7 ± 0.1 | 0.89 | 0.29 ± 0.01a | 0.66 ± 0.06a | 0.46 ± 0.03 | 1.34 ± 0.11 | 0.48 ± 0.12 |
ΔN-glycTr | 0.76 ± 0.03 | 0.6 ± 0.1a | 1.33 | 0.4 ± 0.01 | 0.82 ± 0.06a | 0.53 ± 0.03 | 1.71 ± 0.04a | 0.56 ± 0.04 |
The parameters were derived from convMM, invMM and binding isotherm using Avicel, RAC and BMCC. The ± values correspond to the error of non-linear fit of Michaelis–Menten curves and binding isotherm curves. The parameters statistically different from the others at the 0.05 level of significance are indicated with letter ‘a’ (Additional file 1: Table S2)