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. 2020 Aug 6;13:136. doi: 10.1186/s13068-020-01779-9

Table 3.

Steady-state kinetics and binding affinity parameters (50 °C) of TrCel7A WT and the variants with modified N-glycosylation pattern

TrCel7A convMM invMM Kinetic substrate accessibility Adsorption isotherms
convVmax/E0 convKM η invVmax/S0 invKM Γattack Γmax Kd
(s−1) (g/ L) (L/g/s) (μmol/g/s) (μM) (μmol/g) (μmol/g) (μM)
Avicel
 WTAo 0.40 ± 0.01a 18.1 ± 1.8a 0.022 0.034 ± 0.001 2.45 ± 0.18 0.08 ± 0.00 0.1 ± 0.01 0.26 ± 0.06
 N45QAo 0.34 ± 0.02 11.6 ± 2.5 0.030 0.048 ± 0a 2.92 ± 0.04a 0.14 ± 0.01 0.23 ± 0.02a 0.69 ± 0.21
 N270QAo 0.35 ± 0.02 11.6 ± 2.4 0.030 0.031 ± 0.001 2.22 ± 0.2 0.09 ± 0.01 0.13 ± 0.01 1 ± 0.28
 N384QAo 0.35 ± 0.02 10.6 ± 1.5 0.033 0.037 ± 0.001a 2.54 ± 0.25a 0.11 ± 0.01 0.10 ± 0.01 0.3 ± 0.18
 ΔN-glycAo 0.24 ± 0.01a 6.2 ± 0.8 0.040 0.048 ± 0.002a 3.54 ± 0.3a 0.20 ± 0.01 0.27 ± 0.02a 1.01 ± 0.22a
 WTTr 0.32 ± 0.01 9 ± 1.2 0.035 0.02 ± 0.001a 1.16 ± 0.09a 0.06 ± 0.00 0.08 ± 0.01a 0.27 ± 0.08
 ΔN-glycTr 0.32 ± 0.01 7.4 ± 0.9 0.043 0.032 ± 0.001 1.71 ± 0.12 0.10 ± 0.00 0.11 ± 0.01 0.4 ± 0.11
RAC
 WTAo 0.48 ± 0.02a 1.3 ± 0.2a 0.37 0.65 ± 0.01 0.95 ± 0.06 1.4 ± 0.1 0.92 ± 0.04a 0.03 ± 0.01
 N45QAo 0.37 ± 0.02 0.9 ± 0.1 0.41 0.74 ± 0.02a 1.23 ± 0.1a 2.0 ± 0.1 1.79 ± 0.0 a 0.05 ± 0a
 N270QAo 0.38 ± 0.02 1.1 ± 0.2 0.33 0.61 ± 0.01 1.15 ± 0.08 1.6 ± 0.1 1.14 ± 0.05a 0.03 ± 0.01
 N384QAo 0.34 ± 0.01a 0.8 ± 0.1 0.43 0.62 ± 0.02 1.03 ± 0.08 1.8 ± 0.1 1.2 ± 0.08a 0.02 ± 0.01
 ΔN-glycAo 0.30 ± 0.01a 0.5 ± 0.0a 0.40 0.68 ± 0.01a 0.82 ± 0.05 2.9 ± 0.1 1.58 ± 0.04 0.11 ± 0.01a
 WTTr 0.47 ± 0.01a 1 ± 0.1 0.45 0.46 ± 0.01a 0.94 ± 0.09 1.0 ± 0.0 1.83 ± 0.18a 0.01 ± 0.01a
 ΔN-glycTr 0.47 ± 0.01a 0.8 ± 0.1 0.58 0.59 ± 0.02 0.93 ± 0.1 1.3 ± 0.0 1.59 ± 0.16 0.03 ± 0.01
BMCC
 WTAo 1.46 ± 0.14a 2.1 ± 0.4a 0.71 0.45 ± 0.02a 1.59 ± 0.15a 0.31 ± 0.03 1.17 ± 0.12 1.28 ± 0.29
 N45QAo 1.33 ± 0.09a 1.7 ± 0.2a 0.77 0.52 ± 0.02a 1.23 ± 0.11 0.39 ± 0.03 1.96 ± 0.35a 1.2 ± 0.44
 N270QAo 1.13 ± 0.06a 1.1 ± 0.1 1.01 0.44 ± 0.02 1.49 ± 0.14a 0.39 ± 0.03 0.93 ± 0.15a 0.99 ± 0.38
 N384QAo 1.01 ± 0.03 1 ± 0.1 1.02 0.38 ± 0.02 1.29 ± 0.15 0.38 ± 0.02 1.06 ± 0.04 0.85 ± 0.08
 ΔN-glycAo 0.96 ± 0.09 1.6 ± 0.3a 0.59 0.48 ± 0.01a 1.38 ± 0.1a 0.50 ± 0.05 1.2 ± 0.06 0.62 ± 0.09
 WTTr 0.63 ± 0.03a 0.7 ± 0.1 0.89 0.29 ± 0.01a 0.66 ± 0.06a 0.46 ± 0.03 1.34 ± 0.11 0.48 ± 0.12
 ΔN-glycTr 0.76 ± 0.03 0.6 ± 0.1a 1.33 0.4 ± 0.01 0.82 ± 0.06a 0.53 ± 0.03 1.71 ± 0.04a 0.56 ± 0.04

The parameters were derived from convMM, invMM and binding isotherm using Avicel, RAC and BMCC. The ± values correspond to the error of non-linear fit of Michaelis–Menten curves and binding isotherm curves. The parameters statistically different from the others at the 0.05 level of significance are indicated with letter ‘a’ (Additional file 1: Table S2)