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. 2020 Aug 7;10:13330. doi: 10.1038/s41598-020-70253-1

Table 1.

Enzyme–substrate binding report for adenine and kinetin binding to the APRT.

Ligand Receptor Interaction Distance E (kcal/mol)
Adenine interactions to human APRT
N7 3 OE1 GLU 104 (B) H-donor 2.69 − 6.3
N6 6 O VAL 25 (B) H-donor 3.12 − 1.9
N6 6 OE1 GLU 104 (B) H-donor 2.86 − 5.1
N9 1 NH2 ARG 67 (B) H-acceptor 3.77 − 0.8
N6 6 O HOH 332 (B) H-acceptor 3.61 − 1.2
N1 7 CA PHE 26 (B) H-acceptor 3.43 − 0.5
N1 7 N ARG 27 (B) H-acceptor 2.98 − 4.4
N3 9 NH1 ARG 67 (B) H-acceptor 3.02 − 7.6
N3 9 NH2 ARG 67 (B) H-acceptor 3.52 − 1.2
6-ring CD1 LEU 129 (B) pi-H 3.69 − 0.5
5-ring CD2 LEU 129 (B) pi-H 3.94 − 1.2
Kinetin interactions to human APRT
C 1 CD1 LEU 159 (B) H-donor 3.52 − 0.7
C 3 CD2 LEU 129 (B) H-donor 3.04 − 0.6
C 5 OE2 GLU 104 (B) H-donor 3.04 − 2.1
N 7 CE2 PHE 26 (B) H-donor 3.71 − 0.5
N 13 CG1 VAL 24 (B) H-donor 3.42 − 0.9
N 13 O VAL 25 (B) H-donor 2.85 − 11.7
N 16 O4 PRP 201 (B) H-donor 2.85 − 7.8
C 19 O5 PRP 201 (B) H-donor 2.83 − 2.0
N 22 OE2 GLU 104 (B) H-donor 2.65 − 3.9
N 25 CG1 VAL 24 (B) H-donor 3.44 − 0.7
N 25 O VAL 25 (B) H-donor 2.82 − 5.1
N 25 OE1 GLU 104 (B) H-donor 2.61 − 7.2
N 25 OE2 GLU 104 (B) H-donor 2.69 − 5.0
C 28 CD1 LEU 162 (B) H-donor 4.14 − 0.5
C 28 O HOH 310 (B) H-donor 3.30 − 0.6
C 1 CD1 LEU 159 (B) H-acceptor 3.52 − 0.7
C 3 CD2 LEU 129 (B) H-acceptor 3.68 − 0.6
N 7 CE2 PHE 26 (B) H-acceptor 3.71 − 0.5
N 13 CG1 VAL 24 (B) H-acceptor 3.42 − 0.9
N 25 CG1 VAL 24 (B) H-acceptor 3.44 − 0.7
C 28 CD1 LEU 162 (B) H-acceptor 4.14 − 0.5
N 13 OE2 GLU 104 (B) Ionic 3.29 − 2.8
N 16 OE2 GLU 104 (B) Ionic 3.82 − 0.9
N 22 OE1 GLU 104 (B) Ionic 2.60 − 7.8
N 22 OE2 GLU 104 (B) Ionic 2.65 − 7.3
N 22 O1P PRP 201 (B) Ionic 3.68 − 1.3
N 25 OE1 GLU 104 (B) Ionic 2.61 − 7.7
N 25 OE2 GLU 104 (B) Ionic 2.69 − 6.9
N 16 6-ring TYR 105 (B) Cation-pi 3.84 − 0.9