Table 1.
Origin and characteristics of biological samples used in this study. List of swine farms, locations (farm ID column), animal IDs and numbers, collection dates, age and health status (AS: asymptomatic, PP: paraplegic). The percentages of PSV positivity based on the results of PSV 3DRdRp RT-PCR screening reactions was indicated in the sample type (nasal swab, rectal swab/faeces and serum) columns. For an extended version see Table S2
|
Farm ID |
Animal IDs |
No. of animals |
Collection date |
Age |
Health status |
Nasal swab |
Rectal swab/faeces |
Serum |
|---|---|---|---|---|---|---|---|---|
|
Farm GD (Orosháza) |
GD01-05 |
5 |
09/15/2016 |
≈21–25 days |
PP |
80 % |
100 % |
n/a |
|
|
GD06-09 |
4 |
09/15/2016 |
≈21–25 days |
AS |
75 % |
100 % |
n/a |
|
Farm A (Városföld) |
A1-5 |
5 |
08/12/2016 |
≈35 days |
AS |
100 % |
80 % |
n/a |
|
Farm B (Katymár) |
B1-5 |
5 |
08/18/2016 |
30–35 days |
AS |
0 % |
80 % |
n/a |
|
Farm C (Bácsalmás) |
C1-5 |
5 |
08/18/2016 |
≈35 days |
AS |
60 % |
100 % |
n/a |
|
Farm D (Nyíribrony) |
D1-5 |
5 |
08/10/2016 |
30–35 days |
AS |
20 % |
0 % |
n/a |
|
Farm TM (Tázlár) |
TKo1-3 |
3 |
01/2013 |
≈ 11–12 mo. |
AS |
n/a |
0 % |
n/a |
|
|
TM-1121, 1130, 1205 |
3 |
01/2013 |
7–21 days |
PP |
n/a |
33 % |
n/a |
|
Farm NSZ (Nagyszokoly) |
NSzK1 |
1 |
01/23/2013 |
≈ 11–12 mo. |
PP |
n/a |
0 % |
n/a |
|
Farm KEV (Kevermes) |
KEV1-3 |
3 |
09/05/2013 |
≈ 4.5 mo. |
PP |
n/a |
0 % |
n/a |
|
Farm ZS (Zsana) |
ZS1-3 |
3 |
04/14/2013 |
≈70 days |
PP |
n/a |
100 % |
n/a |
|
Farm BUV (Balmazújváros) |
BUV1-2 |
2 |
04/24/2013 |
21–35 days |
PP |
n/a |
100 % |
n/a |
|
Farm SZ (Székelyszabar) |
SZ1K-4K |
4 |
01/2013 |
≈ 11–12 mo. |
AS |
n/a |
25 % |
n/a |
|
|
SZ1M-4M |
4 |
01/2013 |
7–21 days |
PP |
n/a |
50 % |
n/a |
|
Farm EF (Egyházasfalu) |
EF1-10 |
10 |
08/17/2016 |
≈ 3 mo. |
AS |
0 % |
90 % |
10 % |
n/a: no sample available or not applied