Table 2.

List and sequence relationships of various picornaviruses of four genera identified by NGS and blast analyses from a single faecal specimen of a 3-week-old paraplegic pig (SZ1M). Where it was necessary the missing genomic regions from the complete coding sequences (CDS) or complete genomes were determined by RT-PCR and Sanger sequencing methods using contig-specific primer pairs (data not shown). The lengths of the determined viral sequences are found in the ‘Final sequence length’ column

Genus	No. of reads	No. of contigs	Total length of the contig(s)	Final sequence length	Genome completeness	Accession No.	Closest relative by blast	nt identity	aa identity
Enterovirus	3205	4	5331 nt	7228 nt	complete CDS	MN807749	Porcine enterovirus 3 h [HQ702854]	78 %	88 %
Kobuvirus	895	1	7951 nt	7951 nt	complete CDS	MN807751	Porcine kobuvirus 1 [GQ249161]	89 %	96 %
Teschovirus	674	2	6593 nt	6981 nt	complete CDS	MN807750	Porcine teschovirus 3 [MF170908]	87 %	96 %
Sapelovirus	111	1	779 nt	7534 nt	complete genome	MN807752	Porcine sapelovirus 1 [LC425415]	78 %	84 %

nt, nucleotide; aa, amino acid.