Table 3.
Putative lncRNA-mRNA interactions within DEGs.
| Inbred line | lncRNA | mRNA/target | ndG | Functional description of mRNA | ||||
|---|---|---|---|---|---|---|---|---|
| Gene ID | dpi | Fold-change | Gene ID | dpi | Fold-change | |||
| RK416 | HanXRQChr01g0005231 | 8 | − 2.68 | HanXRQChr14g0427881 | 4 | − 4.46 | − 0.4193 | NA |
| HA89 | HanXRQChr08g0221721 | 4 | 2.44 | HanXRQChr02g0038901 | 8 | − 4.74 | − 0.7460 | NA |
| HA89 | HanXRQChr08g0226611 | 4 | − 8.97 | HanXRQChr08g0235441 | 8 | − 6.13 | − 0.2542 | NA |
| HA89 | HanXRQChr08g0229491 | 4 | 5.07 | HanXRQChr02g0038901 | 8 | − 4.74 | − 0.5924 | NA |
| HA89 | HanXRQChr16g0506901 | 4 | 4.72 | HanXRQChr17g0559391 | 8 | − 6.99 | − 0.2190 | Quinone oxidoreductase 2 homolog |
| HA89 | HanXRQChr02g0033591 | 8 | − 2.00 | HanXRQChr02g0046121 | 4 | − 1.58 | − 0.6558 | NA |
| HA89 | HanXRQChr08g0226611 | 8 | − 8.97 | HanXRQChr10g0314321 | 8 | 3.06 | − 0.1667 | E3 UFM1- ligase 1 homolog |
| HA89 | HanXRQChr13g0406311 | 8 | 3.64 | HanXRQChr02g0041971 | 8 | − 7.42 | − 0.1620 | Mitogen-activated kinase 16, partial |
| HA89 | HanXRQChr13g0406311 | 8 | 3.64 | HanXRQChr02g0046121 | 8 | − 1.58 | − 0.2095 | NA |
| HA89 | HanXRQChr13g0406311 | 8 | 3.64 | HanXRQChr10g0308951 | 8 | 2.28 | − 0.1504 | PREDICTED: uncharacterised protein LOC103323638 |
ndG normalised free energy, NA not available.