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The Scallop parameter advisor. The advisor's input mirrors that of Scallop (an RNA-Seq sample that has been aligned to the reference genome). A set of candidate assemblies is created by running Scallop on each parameter vector in the advisor set. The advisor then returns the assembly with the highest AUC value, obtained by running GFFCompare and GTFCuff. AUC, area under the receiver operator characteristic curve.
