Table 2.

The novel genomic locus associated with schizophrenia (SCZ) at conditional FDR (condFDR) < 0.01 given association with Parkinson’s disease (PD)

Locus	Chr	Lead SNP	A1/A2	Nearest Gene	Functional category	P-value SCZ	Odds ratio SCZ	P-value PD	Z-score PD	condFDR
42	5	rs9293740	A/G	RNU6–183P	upstream	5.81E-06	0.95	9.27E-04	−3.31	8.16E-03

The most strongly associated SNP in the novel genomic locus associated with SCZ at condFDR<0.01 given association with PD after merging regions < 250 kb apart into a single locus. The table presents chromosomal position (Chr), nearest gene and functional category, as well as p-values and effect sizes (odds ratios or z-scores) from the original summary statistics on SCZ and PD. The effect sizes are given with reference to allele 1 (A1). For more details and the full list of all loci associated with SCZ at condFDR<0.01, see Supplemental Table 4. See Supplemental Table 6 for all genes mapped to this locus.