TABLE II. Selection of Bartonella bacilliformis USM-LMMB07 proteins by incorporating centrality, chokepoint and drug binding filters.
Locus tag | Gene | Gene product | DS | Human off target | Gut microb | C | Chk | DB | PB |
AWH67_RS01355 | rdgB | non-canonical purine NTP pyrophosphatase | 0.93 | 0.72 | 1 | 0.97 | True | False | False |
AWH67_RS04105 | folA | dihydrofolate reductase | 0.97 | 0.68 | 21 | 0.96 | True | True | True |
AWH67_RS00185 | maf2 | septum formation protein | 0.85 | 0.64 | 12 | 0.97 | True | False | False |
AWH67_RS04665 | purB | adenylosuccinate lyase | 0.86 | 0.73 | 51 | 0.77 | True | False | False |
AWH67_RS05475 | ------- | beta-ketoacyl-ACP synthase II | 0.97 | 1 | 0 | 0.21 | True | False | False |
AWH67_RS03970 | murE | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | 0.95 | 1 | 0 | 0.2 | True | True | True |
AWH67_RS05335 | fabZ | beta-hydroxyacyl-ACP dehydratase | 0.92 | 1 | 22 | 0.19 | True | False | False |
AWH67_RS05565 | fabH | 3-oxoacyl-ACP synthase III | 0.89 | 1 | 67 | 0.21 | True | False | False |
AWH67_RS01510 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.78 | 1 | 23 | 0.27 | True | True | True |
AWH67_RS02160 | trmFO | FADH(2)-oxidising methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | 0.75 | 1 | 72 | 0.2 | True | True | True |
AWH67_RS02410 | uppP | undecaprenyl-diphosphatase | 0.74 | 1 | 3 | 0.12 | True | True | True |
AWH67_RS03995 | murG | undecaprenyl diphosphate-muramoylpentapeptide beta-N- acetylglucosaminyltransferase | 0.73 | 1 | 0 | 0.12 | True | False | False |
AWH67_RS01650 | fabI | enoyl-(acyl-carrier-protein) reductase | 0.99 | 0.71 | 16 | 0.1 | True | True | True |
AWH67_RS04685 | purQ | phosphoribosylformylglycinamidine synthase subunit | 0.89 | 0.75 | 40 | 0.1 | True | False | False |
AWH67_RS01345 | dapE | succinyl-diaminopimelate desuccinylase | 0.75 | 0.78 | 11 | 0.2 | True | False | False |
AWH67_RS04690 | purL | phosphoribosylformylglycinamidine synthase subunit | 0.79 | 0.77 | 39 | 0.1 | True | False | False |
AWH67_RS02870 | fabI | enoyl-(acyl-carrier-protein) reductase | 0.77 | 0.73 | 16 | 0.1 | True | False | False |
C: centrality; Chk: chokepoint; DB: drug binding; DS: druggability score; PB: pocket with binding. -Best candidate proteins are highlighted in yellow.