(A) Enrichment of predicted PRKACA signaling regulon in differentially expressed genes between SHH and other MB subgroups from GSE85217 (Cavalli et al., 2017). P values of regulon enrichment and differential expression of the hub gene are indicated in DA DE table.
(B) WT, Abcc4−/−, Abcc4−/− cells transiently transfected with GFP-tagged human ABCC4 were treated with forskolin (50 μM) and IBMX (100 μM) for 1 hour. cAMP level in the media was measured by ELISA. Bars represent means (± SD) of two independent experiments. ** P < 0.01, **** P <0.0001, ns = not significant, one-way ANOVA. Level of ABCC4 was measured by immunoblotting. Irrelevant lanes were removed and marked with black line.
(C) Schematic of live-cell imaging FRET experiment. Arrow indicates addition of forskolin (50 μM) and IBMX (100 μM). Representative images of plasma membrane, cytosolic, and nuclear-targeted cAMP sensors.
(D) Representative live-cell imaging analyses of WT or Abcc4−/− NIH3T3 expressing plasma membrane or cytosolic cAMP FRET sensors. Percentage of FRET change is represented as means (± SD) of three independent experiments. * P < 0.05, ** P < 0.01, *** P <0.001, Mann-Whitney test.
(E) Live-cell imaging analyses of WT or Abcc4−/− NIH3T3 expressing plasma membrane or cytosolic PKA FRET sensors. Emission ratio time course (means ± SD) of three independent experiments are shown. H89-induced emission change was calculated by subtracting the emission ratio at the start with the end point emission ratio at 60 minutes and represented as a percent emission change. Mann-Whitney test.
(F) Indicated cells were treated SHH-conditioned media. At indicated time points, cells were fixed, permeabilized, and stained with GPR161 and acetylated-a-tubulin to label cilia. Bars are mean (± SEM) of four or five independent experiments with n=40–50 cells/experiment/group. * P < 0.05, ** P < 0.01, ns = not significant, student’s t-test.
(G) WT or Abcc4−/− NIH3T3 cells were treated SHH for 30 minutes or 1 hour. PKA activity was measured by probing for phosphorylation of PKA substrates at consensus PKA motif, RRXS*/T*. Irrelevant lanes were removed and marked with black line.