Table 4.
List of genes in Pectinesterase activity and cell wall modification pathways with their expression values. These two pathways identified through Gene set enrichment analysis (GSEA).
| Name | Blast Description | Length | Tags | FC | logFC | logCPM | P Value | FDR | Wheat orthologs |
|---|---|---|---|---|---|---|---|---|---|
| Pectinesterase activity | |||||||||
| XLOC_059237 | unnamed protein product | 630 | [UP] | 1109 | 10 | 5 | 7.82E−04 | 0.043604 | TraesCS5B02G458900 |
| XLOC_1003867 | pectinesterase-like | 3824 | [UP] | 1040 | 10 | 7 | 1.29E−04 | 0.021255 | TraesCS5A02G216500 |
| XLOC_118963 | probable pectinesterase/pectinesterase inhibitor 21 | 2829 | [UP] | 2261 | 11 | 8 | 9.12E−05 | 0.018767 | TraesCS2D02G091800 |
| XLOC_1220465 | unnamed protein product | 2318 | [UP] | 484 | 9 | 4 | 6.69E−04 | 0.033665 | |
| XLOC_1387037 | unnamed protein product | 2017 | [UP] | 529 | 9 | 4 | 0.001595 | 0.04525 | TraesCS5A02G086800 |
| XLOC_146138 | probable pectinesterase 53 isoform X2 | 3241 | [UP] | 8 | 3 | 3 | 2.90E−04 | 0.026195 | TraesCS2D02G099900 |
| XLOC_149812 | unnamed protein product | 3246 | [UP] | 6 | 2 | 5 | 0.0018072 | 0.047246 | TraesCS6A02G351000 |
| XLOC_386424 | unnamed protein product | 2991 | [UP] | 56 | 6 | 3 | 0.0010457 | 0.037915 | TraesCS1B02G274500 |
| Cell wall modification | |||||||||
| XLOC_059237 | unnamed protein product | 630 | [UP] | 1109 | 10 | 5 | 7.82E−04 | 0.03436 | TraesCS5B02G458900 |
| XLOC_1003867 | pectinesterase-like | 3824 | [UP] | 1040 | 10 | 7 | 1.29E−04 | 0.021255 | TraesCS5A02G216500 |
| XLOC_1018540 | cellulose synthase-like protein D3 | 6970 | [UP] | 1600 | 11 | 7 | 7.61E−04 | 0.034291 | TraesCS2B02G144900 |
| XLOC_109229 | unnamed protein product | 2858 | [UP] | 200 | 8 | 1 | 8.29E−04 | 0.035588 | TraesCS5D02G481800 |
| XLOC_118963 | probable pectinesterase/pectinesterase inhibitor 21 | 2829 | [UP] | 2261 | 11 | 8 | 9.12E−05 | 0.018767 | TraesCS2D02G091800 |
| XLOC_1220465 | unnamed protein product | 2318 | [UP] | 484 | 9 | 4 | 6.69E−04 | 0.033665 | TraesCS3B02G598100 |
| XLOC_1343481 | Polygalacturonase | 1257 | [UP] | 88 | 6 | 1 | 1.56E−04 | 0.022086 | TraesCS5B02G468900 |
| XLOC_1343482 | Polygalacturonase | 2823 | [UP] | 124 | 7 | 1 | 5.03E−04 | 0.031517 | TraesCS5A02G459000 |
| XLOC_1387037 | unnamed protein product | 2017 | [UP] | 529 | 9 | 4 | 0.001595 | 0.04525 | TraesCS5A02G086800 |
| XLOC_1432429 | COBRA-like protein 10 | 4108 | [UP] | 2465 | 11 | 8 | 9.29E−05 | 0.018767 | TraesCS7D02G136500 |
| XLOC_145869 | Exopolygalacturonase | 1273 | [UP] | 1132 | 10 | 7 | 6.95E−04 | 0.034064 | TraesCS6A02G159000 |
| XLOC_386424 | unnamed protein product | 2991 | [UP] | 56 | 6 | 3 | 0.0010457 | 0.037915 | TraesCS1B02G274500 |
FC fold changes, CPM count per million.