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. 2020 Aug 10;21:199. doi: 10.1186/s13059-020-02111-2

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Genetic divergence between uncontaminated individual and contamination sources or haplotype panels impacts ContamLD estimates. a Ancient Iberian (I3756, 1.02× coverage) contaminated with CEU with haplotype panels generated from CEU, TSI, CHB, and YRI populations. b Contamination estimates from the same ancient Iberian contaminated with TSI, CHB, or YRI and analyzed with a CEU panel; from an ancient East Asian (DA362.SG, 1.10× coverage) contaminated with CEU and analyzed with a CHB panel; and from an ancient South African (I9028.SG, 1.21× coverage) contaminated with CEU and analyzed with a YRI panel. The black dotted line is y = x, corresponding to a perfect estimate of contamination. All estimates use the damage-restricted correction (option 1)