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. 2020 Aug 10;21:199. doi: 10.1186/s13059-020-02111-2

Fig. 5.

Fig. 5

Contamination estimates from ContamLD, ANGSD, and ContamMix in 439 ancient individuals of variable ancestry. ANGSD estimates (method 1) are plotted on the x-axis, and on the y-axis are either a ContamMix or b ContamLD estimates. In red are samples that were flagged in ContamLD as “Very_High_Contamination” based on having uncorrected estimates over 15%. All ContamLD estimates below 0 were set to 0