Table 1. Cryo-EM data collection, refinement and validation statistics.
Data collection and processing | ||
---|---|---|
Magnification | 105000 | |
Voltage (kV) | 300 | |
Electron exposure (e-/Å2) | 85 | |
Defocus range (μm) | 0.6–2.3 | |
Pixel size (Å) | 0.84 | |
Symmetry imposed | C1 | |
Initial particle images (no.) | 889272 | |
Final particle images (no.) | 285688 | |
Map resolution (Å) | 2.98 | |
FSC threshold | 0.143 | |
Map resolution range (Å) | 2.85–4.2 | |
Refinement | Monomer | Dimer |
Initial model used (PDB code) | 6CFW, 4HEA | 6CFW, 4HEA |
Model resolution (Å) | 2.97 | 3.04 |
FSC threshold | 0.5 | 0.5 |
Map sharpening B factor (Å) | −42, local resolution-filtered | −42 |
Model composition | ||
Non-hydrogen atoms | 15448 | 30250 |
Protein residues | 1873 | 3730 |
Ligands | 510 | 1020 |
Waters | 242 | 0 |
B factors (Å2) | ||
Protein | 88.4 | 74.4 |
Ligand | 139.1 | 123.4 |
Waters | 89.8 | N/A |
R.m.s. deviations | ||
Bond lengths (Å) | 0.0080 | 0.0078 |
Bond angles (°) | 1.32 | 1.33 |
Validation | ||
MolProbity score | 1.47 | 1.31 |
Clashscore | 3.58 | 2.17 |
Poor rotamers (%) | 0.13 | 0.10 |
Ramachandran plot | ||
Favoured (%) | 95.44 | 95.45 |
Allowed (%) | 4.56 | 4.55 |
Disallowed (%) | 0 | 0 |
EMRinger score | 3.73 | 3.61 |